miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 3' -59.5 NC_001347.2 + 38674 0.67 0.864915
Target:  5'- aCCGUCGUGCCGgCCcaCCGcc-GGCGCa -3'
miRNA:   3'- -GGCAGUGCGGCaGGa-GGCucuCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 96659 0.67 0.843083
Target:  5'- gCGUCACGCUGg---CCGAaggcacGAcGGCGCg -3'
miRNA:   3'- gGCAGUGCGGCaggaGGCU------CU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 192212 0.67 0.850534
Target:  5'- gCGUCcCGCCG---UCCGAGAcGGUGUa -3'
miRNA:   3'- gGCAGuGCGGCaggAGGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 153212 0.67 0.850534
Target:  5'- gUCGUgCAgGUCGUgCagCGuGAGGCGCg -3'
miRNA:   3'- -GGCA-GUgCGGCAgGagGCuCUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 127187 0.67 0.850534
Target:  5'- aCGUCuucuGCGCCGUggCCUCCGAaaccuGGCa- -3'
miRNA:   3'- gGCAG----UGCGGCA--GGAGGCUcu---CCGcg -5'
1598 3' -59.5 NC_001347.2 + 179966 0.67 0.857813
Target:  5'- uCCGUCAuguggagaaacCGCCGuucggcucUCCUCCGAGccaaaagucGCGCc -3'
miRNA:   3'- -GGCAGU-----------GCGGC--------AGGAGGCUCuc-------CGCG- -5'
1598 3' -59.5 NC_001347.2 + 151552 0.67 0.857813
Target:  5'- gCGUCACGCgugaCGUCCUCuCGcugcucuuuGAGGauCGCg -3'
miRNA:   3'- gGCAGUGCG----GCAGGAG-GCu--------CUCC--GCG- -5'
1598 3' -59.5 NC_001347.2 + 183291 0.67 0.864915
Target:  5'- gUCGUUuaGCG-CGUCCUCC-AGGGuGCGUg -3'
miRNA:   3'- -GGCAG--UGCgGCAGGAGGcUCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 38009 0.67 0.864915
Target:  5'- gCCGcCGCGCgG-CCUCggCGGcGGGCGCc -3'
miRNA:   3'- -GGCaGUGCGgCaGGAG--GCUcUCCGCG- -5'
1598 3' -59.5 NC_001347.2 + 177166 0.67 0.864915
Target:  5'- aCCGUCAgGUg---CUCCGAGAcGCGCg -3'
miRNA:   3'- -GGCAGUgCGgcagGAGGCUCUcCGCG- -5'
1598 3' -59.5 NC_001347.2 + 81480 0.66 0.878568
Target:  5'- -aGUgGCGUCGUCgCUCgGcGGGuGCGCa -3'
miRNA:   3'- ggCAgUGCGGCAG-GAGgCuCUC-CGCG- -5'
1598 3' -59.5 NC_001347.2 + 116174 0.67 0.864915
Target:  5'- gCCGaaCAUGCCGaugaguagaUCCGAGGcGGCGCg -3'
miRNA:   3'- -GGCa-GUGCGGCagg------AGGCUCU-CCGCG- -5'
1598 3' -59.5 NC_001347.2 + 127247 0.66 0.903558
Target:  5'- uCCGUCACguacccgacaGCCGuUUCUCgGAcGAGGCc- -3'
miRNA:   3'- -GGCAGUG----------CGGC-AGGAGgCU-CUCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.