miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 139588 0.66 0.969802
Target:  5'- uACGUGCCGG-CCGuAAGC-GAGaCGCu -3'
miRNA:   3'- -UGCGCGGUCuGGC-UUUGuCUCaGCGc -5'
1598 5' -55.7 NC_001347.2 + 101689 0.66 0.969227
Target:  5'- cACGCGUCuGGCCGAAGCGGccaccgauaGCa -3'
miRNA:   3'- -UGCGCGGuCUGGCUUUGUCucag-----CGc -5'
1598 5' -55.7 NC_001347.2 + 108659 0.66 0.96685
Target:  5'- cACGCGUCGGGCa--AGCAGAuGUgGCa -3'
miRNA:   3'- -UGCGCGGUCUGgcuUUGUCU-CAgCGc -5'
1598 5' -55.7 NC_001347.2 + 38946 0.66 0.96685
Target:  5'- uGCGCGCaCAGACCcucGGGAUGGccggccuuGUCGCc -3'
miRNA:   3'- -UGCGCG-GUCUGG---CUUUGUCu-------CAGCGc -5'
1598 5' -55.7 NC_001347.2 + 43097 0.66 0.96685
Target:  5'- -gGCGCCGGcauGCCGAggUGGGGccacUGCGa -3'
miRNA:   3'- ugCGCGGUC---UGGCUuuGUCUCa---GCGC- -5'
1598 5' -55.7 NC_001347.2 + 153785 0.66 0.9637
Target:  5'- gACGcCGCuCAGGCCGugguaguCcGAGUCGCc -3'
miRNA:   3'- -UGC-GCG-GUCUGGCuuu----GuCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 101444 0.66 0.9637
Target:  5'- cGCGCGCUuaaaaacacGGCCGAcGCcauGGAG-CGCGg -3'
miRNA:   3'- -UGCGCGGu--------CUGGCUuUG---UCUCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 77516 0.66 0.9637
Target:  5'- -gGCGCguGGCCGAGGaguGGAaGUUGCa -3'
miRNA:   3'- ugCGCGguCUGGCUUUg--UCU-CAGCGc -5'
1598 5' -55.7 NC_001347.2 + 184428 0.66 0.9637
Target:  5'- -gGCGCCGGgucGCUGuGACGGAGcUCGUc -3'
miRNA:   3'- ugCGCGGUC---UGGCuUUGUCUC-AGCGc -5'
1598 5' -55.7 NC_001347.2 + 148602 0.66 0.960346
Target:  5'- gGCG-GCguGACCG--GCGGugcGGUCGCGg -3'
miRNA:   3'- -UGCgCGguCUGGCuuUGUC---UCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 228903 0.66 0.956784
Target:  5'- gGCGgGCCuGugCGcAAGCAGcguAGUCuGCGg -3'
miRNA:   3'- -UGCgCGGuCugGC-UUUGUC---UCAG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 108198 0.66 0.956784
Target:  5'- uACGCG-CAGGCagc-AUGGAGUCGCGc -3'
miRNA:   3'- -UGCGCgGUCUGgcuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 192741 0.67 0.949021
Target:  5'- aGCGUGCCuuuuGCCGc-GC-GAGUCGCGu -3'
miRNA:   3'- -UGCGCGGuc--UGGCuuUGuCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 1953 0.67 0.949021
Target:  5'- uGCGCgGCgGGGCCGGcGACGGGGaCgGCGg -3'
miRNA:   3'- -UGCG-CGgUCUGGCU-UUGUCUCaG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 94119 0.67 0.940383
Target:  5'- uGCGCGCCugAGAgCCGAuuauCGGGGcagCGCa -3'
miRNA:   3'- -UGCGCGG--UCU-GGCUuu--GUCUCa--GCGc -5'
1598 5' -55.7 NC_001347.2 + 142857 0.67 0.940383
Target:  5'- -aGCGCCGcGGCaccaGAGACAGAGacCGCc -3'
miRNA:   3'- ugCGCGGU-CUGg---CUUUGUCUCa-GCGc -5'
1598 5' -55.7 NC_001347.2 + 89473 0.67 0.940383
Target:  5'- cACGCGCgAGAUCuAAACAGAGaCGg- -3'
miRNA:   3'- -UGCGCGgUCUGGcUUUGUCUCaGCgc -5'
1598 5' -55.7 NC_001347.2 + 85359 0.67 0.935731
Target:  5'- cCGCgGCUAGGCCGAGAC----UCGCGu -3'
miRNA:   3'- uGCG-CGGUCUGGCUUUGucucAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 206695 0.68 0.920424
Target:  5'- gGCGgGCCucuggGGGCCGc-ACGGAG-CGCGa -3'
miRNA:   3'- -UGCgCGG-----UCUGGCuuUGUCUCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 38831 0.68 0.91823
Target:  5'- cCGCGCCGuGCCGAAACcacucguccgcGUCGCGc -3'
miRNA:   3'- uGCGCGGUcUGGCUUUGucu--------CAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.