Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1598 | 5' | -55.7 | NC_001347.2 | + | 166653 | 1 | 0.021007 |
Target: 5'- cACGCGCCAGACCG-AACAGAGUCGCGu -3' miRNA: 3'- -UGCGCGGUCUGGCuUUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 143161 | 0.75 | 0.586327 |
Target: 5'- -gGCGCCAGACCGGacGACAGcGUCuCGu -3' miRNA: 3'- ugCGCGGUCUGGCU--UUGUCuCAGcGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 145494 | 0.74 | 0.606107 |
Target: 5'- cUGU-CCAGACCGGAugAGAGUgGCGa -3' miRNA: 3'- uGCGcGGUCUGGCUUugUCUCAgCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 208032 | 0.74 | 0.635895 |
Target: 5'- -gGCGaUgGGACCGAcguCGGAGUCGCGg -3' miRNA: 3'- ugCGC-GgUCUGGCUuu-GUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 38752 | 0.74 | 0.606107 |
Target: 5'- -aGCGCCGG-CUGAGGCAGcagcGUCGCGc -3' miRNA: 3'- ugCGCGGUCuGGCUUUGUCu---CAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 2366 | 0.73 | 0.655752 |
Target: 5'- gGCGCGCUGGcGCUGGGACGcGAGUCgGCGc -3' miRNA: 3'- -UGCGCGGUC-UGGCUUUGU-CUCAG-CGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 34581 | 0.73 | 0.665658 |
Target: 5'- cUGCaGCCAGACCGGAGCGGuga-GCGg -3' miRNA: 3'- uGCG-CGGUCUGGCUUUGUCucagCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 210888 | 0.73 | 0.704945 |
Target: 5'- cCGCGCCAG-CUGgcACGGAGUUgGCGu -3' miRNA: 3'- uGCGCGGUCuGGCuuUGUCUCAG-CGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 16835 | 0.71 | 0.771139 |
Target: 5'- cGCGCgGCCAGGCUGGAacgcaACGGAGgcuGCGu -3' miRNA: 3'- -UGCG-CGGUCUGGCUU-----UGUCUCag-CGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 170399 | 0.71 | 0.797923 |
Target: 5'- aACGCGCUGuGGCgCGAGAUGGAcaccguGUCGCGg -3' miRNA: 3'- -UGCGCGGU-CUG-GCUUUGUCU------CAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 165993 | 0.7 | 0.83964 |
Target: 5'- aGCGCGCacccaGGAccuCCGguACGGAcGUCGCGc -3' miRNA: 3'- -UGCGCGg----UCU---GGCuuUGUCU-CAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 196965 | 0.7 | 0.83964 |
Target: 5'- cGCGCGCCGccGAcgcCCGAGACGGcG-CGCGu -3' miRNA: 3'- -UGCGCGGU--CU---GGCUUUGUCuCaGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 166051 | 0.7 | 0.855132 |
Target: 5'- -gGUGUCGGGCgucauGCGGAGUCGCGg -3' miRNA: 3'- ugCGCGGUCUGgcuu-UGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 59248 | 0.7 | 0.831625 |
Target: 5'- aACGUG-CAGACuCG--GCGGGGUCGCGu -3' miRNA: 3'- -UGCGCgGUCUG-GCuuUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 174997 | 0.7 | 0.831625 |
Target: 5'- uGCGgGCCGuGCCGGu--GGAGUCGCa -3' miRNA: 3'- -UGCgCGGUcUGGCUuugUCUCAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 141601 | 0.7 | 0.823438 |
Target: 5'- -gGCGCCAGACUGuguGCuGAGUuaCGUGg -3' miRNA: 3'- ugCGCGGUCUGGCuu-UGuCUCA--GCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 48840 | 0.69 | 0.862596 |
Target: 5'- cACGCGUCAGGgCGguGCGGcGuUCGCGu -3' miRNA: 3'- -UGCGCGGUCUgGCuuUGUCuC-AGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 36780 | 0.69 | 0.881754 |
Target: 5'- cACGCGCUacguagccggucgcGGACC---GCGGAGUCGgGg -3' miRNA: 3'- -UGCGCGG--------------UCUGGcuuUGUCUCAGCgC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 39498 | 0.69 | 0.883791 |
Target: 5'- cCGCgGCCGcGACCaaGggGCGGGGggCGCGg -3' miRNA: 3'- uGCG-CGGU-CUGG--CuuUGUCUCa-GCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 163623 | 0.69 | 0.883791 |
Target: 5'- -aGCGCCGaGCCGcgGCugcccGGGUCGCGc -3' miRNA: 3'- ugCGCGGUcUGGCuuUGu----CUCAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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