miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 166653 1 0.021007
Target:  5'- cACGCGCCAGACCG-AACAGAGUCGCGu -3'
miRNA:   3'- -UGCGCGGUCUGGCuUUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 143161 0.75 0.586327
Target:  5'- -gGCGCCAGACCGGacGACAGcGUCuCGu -3'
miRNA:   3'- ugCGCGGUCUGGCU--UUGUCuCAGcGC- -5'
1598 5' -55.7 NC_001347.2 + 145494 0.74 0.606107
Target:  5'- cUGU-CCAGACCGGAugAGAGUgGCGa -3'
miRNA:   3'- uGCGcGGUCUGGCUUugUCUCAgCGC- -5'
1598 5' -55.7 NC_001347.2 + 38752 0.74 0.606107
Target:  5'- -aGCGCCGG-CUGAGGCAGcagcGUCGCGc -3'
miRNA:   3'- ugCGCGGUCuGGCUUUGUCu---CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 208032 0.74 0.635895
Target:  5'- -gGCGaUgGGACCGAcguCGGAGUCGCGg -3'
miRNA:   3'- ugCGC-GgUCUGGCUuu-GUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 2366 0.73 0.655752
Target:  5'- gGCGCGCUGGcGCUGGGACGcGAGUCgGCGc -3'
miRNA:   3'- -UGCGCGGUC-UGGCUUUGU-CUCAG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 34581 0.73 0.665658
Target:  5'- cUGCaGCCAGACCGGAGCGGuga-GCGg -3'
miRNA:   3'- uGCG-CGGUCUGGCUUUGUCucagCGC- -5'
1598 5' -55.7 NC_001347.2 + 210888 0.73 0.704945
Target:  5'- cCGCGCCAG-CUGgcACGGAGUUgGCGu -3'
miRNA:   3'- uGCGCGGUCuGGCuuUGUCUCAG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 16835 0.71 0.771139
Target:  5'- cGCGCgGCCAGGCUGGAacgcaACGGAGgcuGCGu -3'
miRNA:   3'- -UGCG-CGGUCUGGCUU-----UGUCUCag-CGC- -5'
1598 5' -55.7 NC_001347.2 + 170399 0.71 0.797923
Target:  5'- aACGCGCUGuGGCgCGAGAUGGAcaccguGUCGCGg -3'
miRNA:   3'- -UGCGCGGU-CUG-GCUUUGUCU------CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 141601 0.7 0.823438
Target:  5'- -gGCGCCAGACUGuguGCuGAGUuaCGUGg -3'
miRNA:   3'- ugCGCGGUCUGGCuu-UGuCUCA--GCGC- -5'
1598 5' -55.7 NC_001347.2 + 59248 0.7 0.831625
Target:  5'- aACGUG-CAGACuCG--GCGGGGUCGCGu -3'
miRNA:   3'- -UGCGCgGUCUG-GCuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 174997 0.7 0.831625
Target:  5'- uGCGgGCCGuGCCGGu--GGAGUCGCa -3'
miRNA:   3'- -UGCgCGGUcUGGCUuugUCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 196965 0.7 0.83964
Target:  5'- cGCGCGCCGccGAcgcCCGAGACGGcG-CGCGu -3'
miRNA:   3'- -UGCGCGGU--CU---GGCUUUGUCuCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 165993 0.7 0.83964
Target:  5'- aGCGCGCacccaGGAccuCCGguACGGAcGUCGCGc -3'
miRNA:   3'- -UGCGCGg----UCU---GGCuuUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 166051 0.7 0.855132
Target:  5'- -gGUGUCGGGCgucauGCGGAGUCGCGg -3'
miRNA:   3'- ugCGCGGUCUGgcuu-UGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 148836 0.69 0.862596
Target:  5'- -gGCGCgAGACCcu-GguGGGUCGCGu -3'
miRNA:   3'- ugCGCGgUCUGGcuuUguCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 139276 0.69 0.862596
Target:  5'- uACGCGUUGGAggcuuacaugcCCGAGGCGGA-UCGCGu -3'
miRNA:   3'- -UGCGCGGUCU-----------GGCUUUGUCUcAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 48840 0.69 0.862596
Target:  5'- cACGCGUCAGGgCGguGCGGcGuUCGCGu -3'
miRNA:   3'- -UGCGCGGUCUgGCuuUGUCuC-AGCGC- -5'
1598 5' -55.7 NC_001347.2 + 6802 0.69 0.87693
Target:  5'- aACGUuCCAGACCaGAGCAGAcuGUCGUu -3'
miRNA:   3'- -UGCGcGGUCUGGcUUUGUCU--CAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.