miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 36780 0.69 0.881754
Target:  5'- cACGCGCUacguagccggucgcGGACC---GCGGAGUCGgGg -3'
miRNA:   3'- -UGCGCGG--------------UCUGGcuuUGUCUCAGCgC- -5'
1598 5' -55.7 NC_001347.2 + 97519 0.69 0.883791
Target:  5'- cGCGCGCC--GCCGAGAUuc-GUCGCu -3'
miRNA:   3'- -UGCGCGGucUGGCUUUGucuCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 163623 0.69 0.883791
Target:  5'- -aGCGCCGaGCCGcgGCugcccGGGUCGCGc -3'
miRNA:   3'- ugCGCGGUcUGGCuuUGu----CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 39498 0.69 0.883791
Target:  5'- cCGCgGCCGcGACCaaGggGCGGGGggCGCGg -3'
miRNA:   3'- uGCG-CGGU-CUGG--CuuUGUCUCa-GCGC- -5'
1598 5' -55.7 NC_001347.2 + 189416 0.69 0.890441
Target:  5'- cACGaGCCAGAaaCCGGugcugGGCAagcGAGUCGCGa -3'
miRNA:   3'- -UGCgCGGUCU--GGCU-----UUGU---CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 107432 0.69 0.890441
Target:  5'- gGCGCGgCGGACgaGGGACuGGAGgugCGCGu -3'
miRNA:   3'- -UGCGCgGUCUGg-CUUUG-UCUCa--GCGC- -5'
1598 5' -55.7 NC_001347.2 + 75936 0.68 0.896877
Target:  5'- uGCGCGCCAaguucuGGCgGAAcCAGAGcUCGaCGg -3'
miRNA:   3'- -UGCGCGGU------CUGgCUUuGUCUC-AGC-GC- -5'
1598 5' -55.7 NC_001347.2 + 30588 0.68 0.896877
Target:  5'- gACGCGCCGGGCgGcuuccuGCGGccGGcCGCGg -3'
miRNA:   3'- -UGCGCGGUCUGgCuu----UGUC--UCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 139664 0.68 0.896877
Target:  5'- cGCGUGUgCuGAUCGAGGCGGcGUUGCGg -3'
miRNA:   3'- -UGCGCG-GuCUGGCUUUGUCuCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 200448 0.68 0.896877
Target:  5'- gACGCGCCuGGCCuucgu-GGGUCGCu -3'
miRNA:   3'- -UGCGCGGuCUGGcuuuguCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 116775 0.68 0.903096
Target:  5'- uGCGacaGCguGACC---GCGGGGUCGCGc -3'
miRNA:   3'- -UGCg--CGguCUGGcuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 185447 0.68 0.909095
Target:  5'- uCGUaCCGuGCCGAGACAGAaGUUGCGc -3'
miRNA:   3'- uGCGcGGUcUGGCUUUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 38831 0.68 0.91823
Target:  5'- cCGCGCCGuGCCGAAACcacucguccgcGUCGCGc -3'
miRNA:   3'- uGCGCGGUcUGGCUUUGucu--------CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 206695 0.68 0.920424
Target:  5'- gGCGgGCCucuggGGGCCGc-ACGGAG-CGCGa -3'
miRNA:   3'- -UGCgCGG-----UCUGGCuuUGUCUCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 85359 0.67 0.935731
Target:  5'- cCGCgGCUAGGCCGAGAC----UCGCGu -3'
miRNA:   3'- uGCG-CGGUCUGGCUUUGucucAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 89473 0.67 0.940383
Target:  5'- cACGCGCgAGAUCuAAACAGAGaCGg- -3'
miRNA:   3'- -UGCGCGgUCUGGcUUUGUCUCaGCgc -5'
1598 5' -55.7 NC_001347.2 + 94119 0.67 0.940383
Target:  5'- uGCGCGCCugAGAgCCGAuuauCGGGGcagCGCa -3'
miRNA:   3'- -UGCGCGG--UCU-GGCUuu--GUCUCa--GCGc -5'
1598 5' -55.7 NC_001347.2 + 142857 0.67 0.940383
Target:  5'- -aGCGCCGcGGCaccaGAGACAGAGacCGCc -3'
miRNA:   3'- ugCGCGGU-CUGg---CUUUGUCUCa-GCGc -5'
1598 5' -55.7 NC_001347.2 + 1953 0.67 0.949021
Target:  5'- uGCGCgGCgGGGCCGGcGACGGGGaCgGCGg -3'
miRNA:   3'- -UGCG-CGgUCUGGCU-UUGUCUCaG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 192741 0.67 0.949021
Target:  5'- aGCGUGCCuuuuGCCGc-GC-GAGUCGCGu -3'
miRNA:   3'- -UGCGCGGuc--UGGCuuUGuCUCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.