Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1598 | 5' | -55.7 | NC_001347.2 | + | 228903 | 0.66 | 0.956784 |
Target: 5'- gGCGgGCCuGugCGcAAGCAGcguAGUCuGCGg -3' miRNA: 3'- -UGCgCGGuCugGC-UUUGUC---UCAG-CGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 108198 | 0.66 | 0.956784 |
Target: 5'- uACGCG-CAGGCagc-AUGGAGUCGCGc -3' miRNA: 3'- -UGCGCgGUCUGgcuuUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 148602 | 0.66 | 0.960346 |
Target: 5'- gGCG-GCguGACCG--GCGGugcGGUCGCGg -3' miRNA: 3'- -UGCgCGguCUGGCuuUGUC---UCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 101444 | 0.66 | 0.9637 |
Target: 5'- cGCGCGCUuaaaaacacGGCCGAcGCcauGGAG-CGCGg -3' miRNA: 3'- -UGCGCGGu--------CUGGCUuUG---UCUCaGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 77516 | 0.66 | 0.9637 |
Target: 5'- -gGCGCguGGCCGAGGaguGGAaGUUGCa -3' miRNA: 3'- ugCGCGguCUGGCUUUg--UCU-CAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 153785 | 0.66 | 0.9637 |
Target: 5'- gACGcCGCuCAGGCCGugguaguCcGAGUCGCc -3' miRNA: 3'- -UGC-GCG-GUCUGGCuuu----GuCUCAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 184428 | 0.66 | 0.9637 |
Target: 5'- -gGCGCCGGgucGCUGuGACGGAGcUCGUc -3' miRNA: 3'- ugCGCGGUC---UGGCuUUGUCUC-AGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 43097 | 0.66 | 0.96685 |
Target: 5'- -gGCGCCGGcauGCCGAggUGGGGccacUGCGa -3' miRNA: 3'- ugCGCGGUC---UGGCUuuGUCUCa---GCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 38946 | 0.66 | 0.96685 |
Target: 5'- uGCGCGCaCAGACCcucGGGAUGGccggccuuGUCGCc -3' miRNA: 3'- -UGCGCG-GUCUGG---CUUUGUCu-------CAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 108659 | 0.66 | 0.96685 |
Target: 5'- cACGCGUCGGGCa--AGCAGAuGUgGCa -3' miRNA: 3'- -UGCGCGGUCUGgcuUUGUCU-CAgCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 101689 | 0.66 | 0.969227 |
Target: 5'- cACGCGUCuGGCCGAAGCGGccaccgauaGCa -3' miRNA: 3'- -UGCGCGGuCUGGCUUUGUCucag-----CGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 139588 | 0.66 | 0.969802 |
Target: 5'- uACGUGCCGG-CCGuAAGC-GAGaCGCu -3' miRNA: 3'- -UGCGCGGUCuGGC-UUUGuCUCaGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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