miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 185447 0.68 0.909095
Target:  5'- uCGUaCCGuGCCGAGACAGAaGUUGCGc -3'
miRNA:   3'- uGCGcGGUcUGGCUUUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 116775 0.68 0.903096
Target:  5'- uGCGacaGCguGACC---GCGGGGUCGCGc -3'
miRNA:   3'- -UGCg--CGguCUGGcuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 200448 0.68 0.896877
Target:  5'- gACGCGCCuGGCCuucgu-GGGUCGCu -3'
miRNA:   3'- -UGCGCGGuCUGGcuuuguCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 139664 0.68 0.896877
Target:  5'- cGCGUGUgCuGAUCGAGGCGGcGUUGCGg -3'
miRNA:   3'- -UGCGCG-GuCUGGCUUUGUCuCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 30588 0.68 0.896877
Target:  5'- gACGCGCCGGGCgGcuuccuGCGGccGGcCGCGg -3'
miRNA:   3'- -UGCGCGGUCUGgCuu----UGUC--UCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 75936 0.68 0.896877
Target:  5'- uGCGCGCCAaguucuGGCgGAAcCAGAGcUCGaCGg -3'
miRNA:   3'- -UGCGCGGU------CUGgCUUuGUCUC-AGC-GC- -5'
1598 5' -55.7 NC_001347.2 + 107432 0.69 0.890441
Target:  5'- gGCGCGgCGGACgaGGGACuGGAGgugCGCGu -3'
miRNA:   3'- -UGCGCgGUCUGg-CUUUG-UCUCa--GCGC- -5'
1598 5' -55.7 NC_001347.2 + 189416 0.69 0.890441
Target:  5'- cACGaGCCAGAaaCCGGugcugGGCAagcGAGUCGCGa -3'
miRNA:   3'- -UGCgCGGUCU--GGCU-----UUGU---CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 39498 0.69 0.883791
Target:  5'- cCGCgGCCGcGACCaaGggGCGGGGggCGCGg -3'
miRNA:   3'- uGCG-CGGU-CUGG--CuuUGUCUCa-GCGC- -5'
1598 5' -55.7 NC_001347.2 + 163623 0.69 0.883791
Target:  5'- -aGCGCCGaGCCGcgGCugcccGGGUCGCGc -3'
miRNA:   3'- ugCGCGGUcUGGCuuUGu----CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 97519 0.69 0.883791
Target:  5'- cGCGCGCC--GCCGAGAUuc-GUCGCu -3'
miRNA:   3'- -UGCGCGGucUGGCUUUGucuCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 36780 0.69 0.881754
Target:  5'- cACGCGCUacguagccggucgcGGACC---GCGGAGUCGgGg -3'
miRNA:   3'- -UGCGCGG--------------UCUGGcuuUGUCUCAGCgC- -5'
1598 5' -55.7 NC_001347.2 + 6802 0.69 0.87693
Target:  5'- aACGUuCCAGACCaGAGCAGAcuGUCGUu -3'
miRNA:   3'- -UGCGcGGUCUGGcUUUGUCU--CAGCGc -5'
1598 5' -55.7 NC_001347.2 + 148836 0.69 0.862596
Target:  5'- -gGCGCgAGACCcu-GguGGGUCGCGu -3'
miRNA:   3'- ugCGCGgUCUGGcuuUguCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 139276 0.69 0.862596
Target:  5'- uACGCGUUGGAggcuuacaugcCCGAGGCGGA-UCGCGu -3'
miRNA:   3'- -UGCGCGGUCU-----------GGCUUUGUCUcAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 48840 0.69 0.862596
Target:  5'- cACGCGUCAGGgCGguGCGGcGuUCGCGu -3'
miRNA:   3'- -UGCGCGGUCUgGCuuUGUCuC-AGCGC- -5'
1598 5' -55.7 NC_001347.2 + 166051 0.7 0.855132
Target:  5'- -gGUGUCGGGCgucauGCGGAGUCGCGg -3'
miRNA:   3'- ugCGCGGUCUGgcuu-UGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 196965 0.7 0.83964
Target:  5'- cGCGCGCCGccGAcgcCCGAGACGGcG-CGCGu -3'
miRNA:   3'- -UGCGCGGU--CU---GGCUUUGUCuCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 165993 0.7 0.83964
Target:  5'- aGCGCGCacccaGGAccuCCGguACGGAcGUCGCGc -3'
miRNA:   3'- -UGCGCGg----UCU---GGCuuUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 174997 0.7 0.831625
Target:  5'- uGCGgGCCGuGCCGGu--GGAGUCGCa -3'
miRNA:   3'- -UGCgCGGUcUGGCUuugUCUCAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.