miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 1953 0.67 0.949021
Target:  5'- uGCGCgGCgGGGCCGGcGACGGGGaCgGCGg -3'
miRNA:   3'- -UGCG-CGgUCUGGCU-UUGUCUCaG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 2366 0.73 0.655752
Target:  5'- gGCGCGCUGGcGCUGGGACGcGAGUCgGCGc -3'
miRNA:   3'- -UGCGCGGUC-UGGCUUUGU-CUCAG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 6802 0.69 0.87693
Target:  5'- aACGUuCCAGACCaGAGCAGAcuGUCGUu -3'
miRNA:   3'- -UGCGcGGUCUGGcUUUGUCU--CAGCGc -5'
1598 5' -55.7 NC_001347.2 + 16835 0.71 0.771139
Target:  5'- cGCGCgGCCAGGCUGGAacgcaACGGAGgcuGCGu -3'
miRNA:   3'- -UGCG-CGGUCUGGCUU-----UGUCUCag-CGC- -5'
1598 5' -55.7 NC_001347.2 + 30588 0.68 0.896877
Target:  5'- gACGCGCCGGGCgGcuuccuGCGGccGGcCGCGg -3'
miRNA:   3'- -UGCGCGGUCUGgCuu----UGUC--UCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 34581 0.73 0.665658
Target:  5'- cUGCaGCCAGACCGGAGCGGuga-GCGg -3'
miRNA:   3'- uGCG-CGGUCUGGCUUUGUCucagCGC- -5'
1598 5' -55.7 NC_001347.2 + 36780 0.69 0.881754
Target:  5'- cACGCGCUacguagccggucgcGGACC---GCGGAGUCGgGg -3'
miRNA:   3'- -UGCGCGG--------------UCUGGcuuUGUCUCAGCgC- -5'
1598 5' -55.7 NC_001347.2 + 38752 0.74 0.606107
Target:  5'- -aGCGCCGG-CUGAGGCAGcagcGUCGCGc -3'
miRNA:   3'- ugCGCGGUCuGGCUUUGUCu---CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 38831 0.68 0.91823
Target:  5'- cCGCGCCGuGCCGAAACcacucguccgcGUCGCGc -3'
miRNA:   3'- uGCGCGGUcUGGCUUUGucu--------CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 38946 0.66 0.96685
Target:  5'- uGCGCGCaCAGACCcucGGGAUGGccggccuuGUCGCc -3'
miRNA:   3'- -UGCGCG-GUCUGG---CUUUGUCu-------CAGCGc -5'
1598 5' -55.7 NC_001347.2 + 39498 0.69 0.883791
Target:  5'- cCGCgGCCGcGACCaaGggGCGGGGggCGCGg -3'
miRNA:   3'- uGCG-CGGU-CUGG--CuuUGUCUCa-GCGC- -5'
1598 5' -55.7 NC_001347.2 + 43097 0.66 0.96685
Target:  5'- -gGCGCCGGcauGCCGAggUGGGGccacUGCGa -3'
miRNA:   3'- ugCGCGGUC---UGGCUuuGUCUCa---GCGC- -5'
1598 5' -55.7 NC_001347.2 + 48840 0.69 0.862596
Target:  5'- cACGCGUCAGGgCGguGCGGcGuUCGCGu -3'
miRNA:   3'- -UGCGCGGUCUgGCuuUGUCuC-AGCGC- -5'
1598 5' -55.7 NC_001347.2 + 59248 0.7 0.831625
Target:  5'- aACGUG-CAGACuCG--GCGGGGUCGCGu -3'
miRNA:   3'- -UGCGCgGUCUG-GCuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 75936 0.68 0.896877
Target:  5'- uGCGCGCCAaguucuGGCgGAAcCAGAGcUCGaCGg -3'
miRNA:   3'- -UGCGCGGU------CUGgCUUuGUCUC-AGC-GC- -5'
1598 5' -55.7 NC_001347.2 + 77516 0.66 0.9637
Target:  5'- -gGCGCguGGCCGAGGaguGGAaGUUGCa -3'
miRNA:   3'- ugCGCGguCUGGCUUUg--UCU-CAGCGc -5'
1598 5' -55.7 NC_001347.2 + 85359 0.67 0.935731
Target:  5'- cCGCgGCUAGGCCGAGAC----UCGCGu -3'
miRNA:   3'- uGCG-CGGUCUGGCUUUGucucAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 89473 0.67 0.940383
Target:  5'- cACGCGCgAGAUCuAAACAGAGaCGg- -3'
miRNA:   3'- -UGCGCGgUCUGGcUUUGUCUCaGCgc -5'
1598 5' -55.7 NC_001347.2 + 94119 0.67 0.940383
Target:  5'- uGCGCGCCugAGAgCCGAuuauCGGGGcagCGCa -3'
miRNA:   3'- -UGCGCGG--UCU-GGCUuu--GUCUCa--GCGc -5'
1598 5' -55.7 NC_001347.2 + 97519 0.69 0.883791
Target:  5'- cGCGCGCC--GCCGAGAUuc-GUCGCu -3'
miRNA:   3'- -UGCGCGGucUGGCUUUGucuCAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.