miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 101444 0.66 0.9637
Target:  5'- cGCGCGCUuaaaaacacGGCCGAcGCcauGGAG-CGCGg -3'
miRNA:   3'- -UGCGCGGu--------CUGGCUuUG---UCUCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 101689 0.66 0.969227
Target:  5'- cACGCGUCuGGCCGAAGCGGccaccgauaGCa -3'
miRNA:   3'- -UGCGCGGuCUGGCUUUGUCucag-----CGc -5'
1598 5' -55.7 NC_001347.2 + 107432 0.69 0.890441
Target:  5'- gGCGCGgCGGACgaGGGACuGGAGgugCGCGu -3'
miRNA:   3'- -UGCGCgGUCUGg-CUUUG-UCUCa--GCGC- -5'
1598 5' -55.7 NC_001347.2 + 108198 0.66 0.956784
Target:  5'- uACGCG-CAGGCagc-AUGGAGUCGCGc -3'
miRNA:   3'- -UGCGCgGUCUGgcuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 108659 0.66 0.96685
Target:  5'- cACGCGUCGGGCa--AGCAGAuGUgGCa -3'
miRNA:   3'- -UGCGCGGUCUGgcuUUGUCU-CAgCGc -5'
1598 5' -55.7 NC_001347.2 + 116775 0.68 0.903096
Target:  5'- uGCGacaGCguGACC---GCGGGGUCGCGc -3'
miRNA:   3'- -UGCg--CGguCUGGcuuUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 139276 0.69 0.862596
Target:  5'- uACGCGUUGGAggcuuacaugcCCGAGGCGGA-UCGCGu -3'
miRNA:   3'- -UGCGCGGUCU-----------GGCUUUGUCUcAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 139588 0.66 0.969802
Target:  5'- uACGUGCCGG-CCGuAAGC-GAGaCGCu -3'
miRNA:   3'- -UGCGCGGUCuGGC-UUUGuCUCaGCGc -5'
1598 5' -55.7 NC_001347.2 + 139664 0.68 0.896877
Target:  5'- cGCGUGUgCuGAUCGAGGCGGcGUUGCGg -3'
miRNA:   3'- -UGCGCG-GuCUGGCUUUGUCuCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 141601 0.7 0.823438
Target:  5'- -gGCGCCAGACUGuguGCuGAGUuaCGUGg -3'
miRNA:   3'- ugCGCGGUCUGGCuu-UGuCUCA--GCGC- -5'
1598 5' -55.7 NC_001347.2 + 142857 0.67 0.940383
Target:  5'- -aGCGCCGcGGCaccaGAGACAGAGacCGCc -3'
miRNA:   3'- ugCGCGGU-CUGg---CUUUGUCUCa-GCGc -5'
1598 5' -55.7 NC_001347.2 + 143161 0.75 0.586327
Target:  5'- -gGCGCCAGACCGGacGACAGcGUCuCGu -3'
miRNA:   3'- ugCGCGGUCUGGCU--UUGUCuCAGcGC- -5'
1598 5' -55.7 NC_001347.2 + 145494 0.74 0.606107
Target:  5'- cUGU-CCAGACCGGAugAGAGUgGCGa -3'
miRNA:   3'- uGCGcGGUCUGGCUUugUCUCAgCGC- -5'
1598 5' -55.7 NC_001347.2 + 148602 0.66 0.960346
Target:  5'- gGCG-GCguGACCG--GCGGugcGGUCGCGg -3'
miRNA:   3'- -UGCgCGguCUGGCuuUGUC---UCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 148836 0.69 0.862596
Target:  5'- -gGCGCgAGACCcu-GguGGGUCGCGu -3'
miRNA:   3'- ugCGCGgUCUGGcuuUguCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 153785 0.66 0.9637
Target:  5'- gACGcCGCuCAGGCCGugguaguCcGAGUCGCc -3'
miRNA:   3'- -UGC-GCG-GUCUGGCuuu----GuCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 163623 0.69 0.883791
Target:  5'- -aGCGCCGaGCCGcgGCugcccGGGUCGCGc -3'
miRNA:   3'- ugCGCGGUcUGGCuuUGu----CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 165993 0.7 0.83964
Target:  5'- aGCGCGCacccaGGAccuCCGguACGGAcGUCGCGc -3'
miRNA:   3'- -UGCGCGg----UCU---GGCuuUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 166051 0.7 0.855132
Target:  5'- -gGUGUCGGGCgucauGCGGAGUCGCGg -3'
miRNA:   3'- ugCGCGGUCUGgcuu-UGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 166653 1 0.021007
Target:  5'- cACGCGCCAGACCG-AACAGAGUCGCGu -3'
miRNA:   3'- -UGCGCGGUCUGGCuUUGUCUCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.