miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1598 5' -55.7 NC_001347.2 + 228903 0.66 0.956784
Target:  5'- gGCGgGCCuGugCGcAAGCAGcguAGUCuGCGg -3'
miRNA:   3'- -UGCgCGGuCugGC-UUUGUC---UCAG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 210888 0.73 0.704945
Target:  5'- cCGCGCCAG-CUGgcACGGAGUUgGCGu -3'
miRNA:   3'- uGCGCGGUCuGGCuuUGUCUCAG-CGC- -5'
1598 5' -55.7 NC_001347.2 + 208032 0.74 0.635895
Target:  5'- -gGCGaUgGGACCGAcguCGGAGUCGCGg -3'
miRNA:   3'- ugCGC-GgUCUGGCUuu-GUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 206695 0.68 0.920424
Target:  5'- gGCGgGCCucuggGGGCCGc-ACGGAG-CGCGa -3'
miRNA:   3'- -UGCgCGG-----UCUGGCuuUGUCUCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 200448 0.68 0.896877
Target:  5'- gACGCGCCuGGCCuucgu-GGGUCGCu -3'
miRNA:   3'- -UGCGCGGuCUGGcuuuguCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 196965 0.7 0.83964
Target:  5'- cGCGCGCCGccGAcgcCCGAGACGGcG-CGCGu -3'
miRNA:   3'- -UGCGCGGU--CU---GGCUUUGUCuCaGCGC- -5'
1598 5' -55.7 NC_001347.2 + 192741 0.67 0.949021
Target:  5'- aGCGUGCCuuuuGCCGc-GC-GAGUCGCGu -3'
miRNA:   3'- -UGCGCGGuc--UGGCuuUGuCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 189416 0.69 0.890441
Target:  5'- cACGaGCCAGAaaCCGGugcugGGCAagcGAGUCGCGa -3'
miRNA:   3'- -UGCgCGGUCU--GGCU-----UUGU---CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 185447 0.68 0.909095
Target:  5'- uCGUaCCGuGCCGAGACAGAaGUUGCGc -3'
miRNA:   3'- uGCGcGGUcUGGCUUUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 184428 0.66 0.9637
Target:  5'- -gGCGCCGGgucGCUGuGACGGAGcUCGUc -3'
miRNA:   3'- ugCGCGGUC---UGGCuUUGUCUC-AGCGc -5'
1598 5' -55.7 NC_001347.2 + 174997 0.7 0.831625
Target:  5'- uGCGgGCCGuGCCGGu--GGAGUCGCa -3'
miRNA:   3'- -UGCgCGGUcUGGCUuugUCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 170399 0.71 0.797923
Target:  5'- aACGCGCUGuGGCgCGAGAUGGAcaccguGUCGCGg -3'
miRNA:   3'- -UGCGCGGU-CUG-GCUUUGUCU------CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 166653 1 0.021007
Target:  5'- cACGCGCCAGACCG-AACAGAGUCGCGu -3'
miRNA:   3'- -UGCGCGGUCUGGCuUUGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 166051 0.7 0.855132
Target:  5'- -gGUGUCGGGCgucauGCGGAGUCGCGg -3'
miRNA:   3'- ugCGCGGUCUGgcuu-UGUCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 165993 0.7 0.83964
Target:  5'- aGCGCGCacccaGGAccuCCGguACGGAcGUCGCGc -3'
miRNA:   3'- -UGCGCGg----UCU---GGCuuUGUCU-CAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 163623 0.69 0.883791
Target:  5'- -aGCGCCGaGCCGcgGCugcccGGGUCGCGc -3'
miRNA:   3'- ugCGCGGUcUGGCuuUGu----CUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 153785 0.66 0.9637
Target:  5'- gACGcCGCuCAGGCCGugguaguCcGAGUCGCc -3'
miRNA:   3'- -UGC-GCG-GUCUGGCuuu----GuCUCAGCGc -5'
1598 5' -55.7 NC_001347.2 + 148836 0.69 0.862596
Target:  5'- -gGCGCgAGACCcu-GguGGGUCGCGu -3'
miRNA:   3'- ugCGCGgUCUGGcuuUguCUCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 148602 0.66 0.960346
Target:  5'- gGCG-GCguGACCG--GCGGugcGGUCGCGg -3'
miRNA:   3'- -UGCgCGguCUGGCuuUGUC---UCAGCGC- -5'
1598 5' -55.7 NC_001347.2 + 145494 0.74 0.606107
Target:  5'- cUGU-CCAGACCGGAugAGAGUgGCGa -3'
miRNA:   3'- uGCGcGGUCUGGCUUugUCUCAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.