Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1598 | 5' | -55.7 | NC_001347.2 | + | 143161 | 0.75 | 0.586327 |
Target: 5'- -gGCGCCAGACCGGacGACAGcGUCuCGu -3' miRNA: 3'- ugCGCGGUCUGGCU--UUGUCuCAGcGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 142857 | 0.67 | 0.940383 |
Target: 5'- -aGCGCCGcGGCaccaGAGACAGAGacCGCc -3' miRNA: 3'- ugCGCGGU-CUGg---CUUUGUCUCa-GCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 141601 | 0.7 | 0.823438 |
Target: 5'- -gGCGCCAGACUGuguGCuGAGUuaCGUGg -3' miRNA: 3'- ugCGCGGUCUGGCuu-UGuCUCA--GCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 139664 | 0.68 | 0.896877 |
Target: 5'- cGCGUGUgCuGAUCGAGGCGGcGUUGCGg -3' miRNA: 3'- -UGCGCG-GuCUGGCUUUGUCuCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 139588 | 0.66 | 0.969802 |
Target: 5'- uACGUGCCGG-CCGuAAGC-GAGaCGCu -3' miRNA: 3'- -UGCGCGGUCuGGC-UUUGuCUCaGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 139276 | 0.69 | 0.862596 |
Target: 5'- uACGCGUUGGAggcuuacaugcCCGAGGCGGA-UCGCGu -3' miRNA: 3'- -UGCGCGGUCU-----------GGCUUUGUCUcAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 116775 | 0.68 | 0.903096 |
Target: 5'- uGCGacaGCguGACC---GCGGGGUCGCGc -3' miRNA: 3'- -UGCg--CGguCUGGcuuUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 108659 | 0.66 | 0.96685 |
Target: 5'- cACGCGUCGGGCa--AGCAGAuGUgGCa -3' miRNA: 3'- -UGCGCGGUCUGgcuUUGUCU-CAgCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 108198 | 0.66 | 0.956784 |
Target: 5'- uACGCG-CAGGCagc-AUGGAGUCGCGc -3' miRNA: 3'- -UGCGCgGUCUGgcuuUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 107432 | 0.69 | 0.890441 |
Target: 5'- gGCGCGgCGGACgaGGGACuGGAGgugCGCGu -3' miRNA: 3'- -UGCGCgGUCUGg-CUUUG-UCUCa--GCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 101689 | 0.66 | 0.969227 |
Target: 5'- cACGCGUCuGGCCGAAGCGGccaccgauaGCa -3' miRNA: 3'- -UGCGCGGuCUGGCUUUGUCucag-----CGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 101444 | 0.66 | 0.9637 |
Target: 5'- cGCGCGCUuaaaaacacGGCCGAcGCcauGGAG-CGCGg -3' miRNA: 3'- -UGCGCGGu--------CUGGCUuUG---UCUCaGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 97519 | 0.69 | 0.883791 |
Target: 5'- cGCGCGCC--GCCGAGAUuc-GUCGCu -3' miRNA: 3'- -UGCGCGGucUGGCUUUGucuCAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 94119 | 0.67 | 0.940383 |
Target: 5'- uGCGCGCCugAGAgCCGAuuauCGGGGcagCGCa -3' miRNA: 3'- -UGCGCGG--UCU-GGCUuu--GUCUCa--GCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 89473 | 0.67 | 0.940383 |
Target: 5'- cACGCGCgAGAUCuAAACAGAGaCGg- -3' miRNA: 3'- -UGCGCGgUCUGGcUUUGUCUCaGCgc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 85359 | 0.67 | 0.935731 |
Target: 5'- cCGCgGCUAGGCCGAGAC----UCGCGu -3' miRNA: 3'- uGCG-CGGUCUGGCUUUGucucAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 77516 | 0.66 | 0.9637 |
Target: 5'- -gGCGCguGGCCGAGGaguGGAaGUUGCa -3' miRNA: 3'- ugCGCGguCUGGCUUUg--UCU-CAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 75936 | 0.68 | 0.896877 |
Target: 5'- uGCGCGCCAaguucuGGCgGAAcCAGAGcUCGaCGg -3' miRNA: 3'- -UGCGCGGU------CUGgCUUuGUCUC-AGC-GC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 59248 | 0.7 | 0.831625 |
Target: 5'- aACGUG-CAGACuCG--GCGGGGUCGCGu -3' miRNA: 3'- -UGCGCgGUCUG-GCuuUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 48840 | 0.69 | 0.862596 |
Target: 5'- cACGCGUCAGGgCGguGCGGcGuUCGCGu -3' miRNA: 3'- -UGCGCGGUCUgGCuuUGUCuC-AGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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