Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1598 | 5' | -55.7 | NC_001347.2 | + | 30588 | 0.68 | 0.896877 |
Target: 5'- gACGCGCCGGGCgGcuuccuGCGGccGGcCGCGg -3' miRNA: 3'- -UGCGCGGUCUGgCuu----UGUC--UCaGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 116775 | 0.68 | 0.903096 |
Target: 5'- uGCGacaGCguGACC---GCGGGGUCGCGc -3' miRNA: 3'- -UGCg--CGguCUGGcuuUGUCUCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 139664 | 0.68 | 0.896877 |
Target: 5'- cGCGUGUgCuGAUCGAGGCGGcGUUGCGg -3' miRNA: 3'- -UGCGCG-GuCUGGCUUUGUCuCAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 200448 | 0.68 | 0.896877 |
Target: 5'- gACGCGCCuGGCCuucgu-GGGUCGCu -3' miRNA: 3'- -UGCGCGGuCUGGcuuuguCUCAGCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 38831 | 0.68 | 0.91823 |
Target: 5'- cCGCGCCGuGCCGAAACcacucguccgcGUCGCGc -3' miRNA: 3'- uGCGCGGUcUGGCUUUGucu--------CAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 185447 | 0.68 | 0.909095 |
Target: 5'- uCGUaCCGuGCCGAGACAGAaGUUGCGc -3' miRNA: 3'- uGCGcGGUcUGGCUUUGUCU-CAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 206695 | 0.68 | 0.920424 |
Target: 5'- gGCGgGCCucuggGGGCCGc-ACGGAG-CGCGa -3' miRNA: 3'- -UGCgCGG-----UCUGGCuuUGUCUCaGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 94119 | 0.67 | 0.940383 |
Target: 5'- uGCGCGCCugAGAgCCGAuuauCGGGGcagCGCa -3' miRNA: 3'- -UGCGCGG--UCU-GGCUuu--GUCUCa--GCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 142857 | 0.67 | 0.940383 |
Target: 5'- -aGCGCCGcGGCaccaGAGACAGAGacCGCc -3' miRNA: 3'- ugCGCGGU-CUGg---CUUUGUCUCa-GCGc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 85359 | 0.67 | 0.935731 |
Target: 5'- cCGCgGCUAGGCCGAGAC----UCGCGu -3' miRNA: 3'- uGCG-CGGUCUGGCUUUGucucAGCGC- -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 89473 | 0.67 | 0.940383 |
Target: 5'- cACGCGCgAGAUCuAAACAGAGaCGg- -3' miRNA: 3'- -UGCGCGgUCUGGcUUUGUCUCaGCgc -5' |
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1598 | 5' | -55.7 | NC_001347.2 | + | 139588 | 0.66 | 0.969802 |
Target: 5'- uACGUGCCGG-CCGuAAGC-GAGaCGCu -3' miRNA: 3'- -UGCGCGGUCuGGC-UUUGuCUCaGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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