miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15980 3' -53.6 NC_004065.1 + 75341 0.66 0.990209
Target:  5'- -uCCGUCGcGUUCguccUCGACgGugCCCGa -3'
miRNA:   3'- cuGGUAGCaCAAG----AGCUGgUugGGGU- -5'
15980 3' -53.6 NC_004065.1 + 153528 0.66 0.990209
Target:  5'- uGGCCAUCGa--UUUCGGagaCAACCCUAa -3'
miRNA:   3'- -CUGGUAGCacaAGAGCUg--GUUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 223433 0.66 0.988901
Target:  5'- -cCCA-CGUGUguggCGACCcgaGGCCCCAa -3'
miRNA:   3'- cuGGUaGCACAaga-GCUGG---UUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 151431 0.66 0.988901
Target:  5'- cGACgaCGUCGcGUUCgacggCGACguCGACCCCAu -3'
miRNA:   3'- -CUG--GUAGCaCAAGa----GCUG--GUUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 196275 0.66 0.988901
Target:  5'- aGCCAcUCGUGUUCguuggcguaaUCGACCucgcugcGCUCCGa -3'
miRNA:   3'- cUGGU-AGCACAAG----------AGCUGGu------UGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 65886 0.66 0.987002
Target:  5'- cACCGUCG-GUgaacguuugcucgaUCUCGGCagacGCCCCGg -3'
miRNA:   3'- cUGGUAGCaCA--------------AGAGCUGgu--UGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 90012 0.66 0.985881
Target:  5'- aGCCGUCGc-UUCUCGGCggcguCAGCUCCAc -3'
miRNA:   3'- cUGGUAGCacAAGAGCUG-----GUUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 116455 0.66 0.984153
Target:  5'- uGCCcgCGgccUUCUCGACgAuCCCCAg -3'
miRNA:   3'- cUGGuaGCac-AAGAGCUGgUuGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 77704 0.66 0.982269
Target:  5'- gGGCCc-CGUGUUCcugUCG-CCGAUCCCGa -3'
miRNA:   3'- -CUGGuaGCACAAG---AGCuGGUUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 173179 0.66 0.982269
Target:  5'- gGGCCGUCGUGcgaUUUUCGGC--ACCUCGu -3'
miRNA:   3'- -CUGGUAGCAC---AAGAGCUGguUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 204527 0.67 0.978002
Target:  5'- aGACCGUCGUGg--UCG-CCAgacGCCUCGu -3'
miRNA:   3'- -CUGGUAGCACaagAGCuGGU---UGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 28026 0.67 0.978002
Target:  5'- cGCCAUCGcGUUggCGGCCAacgACCUCGa -3'
miRNA:   3'- cUGGUAGCaCAAgaGCUGGU---UGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 23434 0.67 0.975605
Target:  5'- cGGCCAUCcccccgCUUGACCGAggcCCCCAu -3'
miRNA:   3'- -CUGGUAGcacaa-GAGCUGGUU---GGGGU- -5'
15980 3' -53.6 NC_004065.1 + 111603 0.67 0.973022
Target:  5'- cGCCGcCGUGUUCgccggcgaGAUCGAUCCCGa -3'
miRNA:   3'- cUGGUaGCACAAGag------CUGGUUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 187186 0.67 0.970246
Target:  5'- -uCCGagGgg-UCUCGACCGACCCUc -3'
miRNA:   3'- cuGGUagCacaAGAGCUGGUUGGGGu -5'
15980 3' -53.6 NC_004065.1 + 115911 0.68 0.964094
Target:  5'- gGGCCGUCGUcGgcCUCGGCCGGCagCUCGc -3'
miRNA:   3'- -CUGGUAGCA-CaaGAGCUGGUUG--GGGU- -5'
15980 3' -53.6 NC_004065.1 + 38235 0.69 0.949237
Target:  5'- uGugUAUCGgacUGUUCUCGGCCcugagcugGACUCCGc -3'
miRNA:   3'- -CugGUAGC---ACAAGAGCUGG--------UUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 152971 0.69 0.949237
Target:  5'- gGAUCucggcCGUGUUCUCGucgccgauccgcGCCAGCUCCGa -3'
miRNA:   3'- -CUGGua---GCACAAGAGC------------UGGUUGGGGU- -5'
15980 3' -53.6 NC_004065.1 + 32986 0.69 0.940466
Target:  5'- --gCAUCGUGUguugCGACgAACCCCu -3'
miRNA:   3'- cugGUAGCACAaga-GCUGgUUGGGGu -5'
15980 3' -53.6 NC_004065.1 + 110685 0.7 0.914485
Target:  5'- aGGCCAUCGUGUcUCUgGAgCuGCCCa- -3'
miRNA:   3'- -CUGGUAGCACA-AGAgCUgGuUGGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.