miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15980 5' -58.9 NC_004065.1 + 150510 0.66 0.893485
Target:  5'- --cGGCCGuGCGua--CCUCGGCGAUg -3'
miRNA:   3'- ggaCCGGCuCGCuuucGGGGCUGCUA- -5'
15980 5' -58.9 NC_004065.1 + 186702 0.66 0.893485
Target:  5'- aCCUGGUaccUGAaCGGuuGCCCCGGCa-- -3'
miRNA:   3'- -GGACCG---GCUcGCUuuCGGGGCUGcua -5'
15980 5' -58.9 NC_004065.1 + 5571 0.66 0.893485
Target:  5'- uCCcGGuuGAGCugcccGGCCCgGGCGAa -3'
miRNA:   3'- -GGaCCggCUCGcuu--UCGGGgCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 6846 0.66 0.893485
Target:  5'- cCCUGGaCCGAG-GAGGaccgucGaUCCCGACGAc -3'
miRNA:   3'- -GGACC-GGCUCgCUUU------C-GGGGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 46878 0.66 0.889651
Target:  5'- uCCUGGCCGugacGGCGAggAugcacggcuggagggGGCCgCGAUGGg -3'
miRNA:   3'- -GGACCGGC----UCGCU--U---------------UCGGgGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 47279 0.66 0.887055
Target:  5'- aUCUGuucGCCGAcGUGucgguGGCCCCGGCGu- -3'
miRNA:   3'- -GGAC---CGGCU-CGCuu---UCGGGGCUGCua -5'
15980 5' -58.9 NC_004065.1 + 29707 0.66 0.887055
Target:  5'- gCC-GGUCGAGCGGcggacgccGCCCagGACGAUg -3'
miRNA:   3'- -GGaCCGGCUCGCUuu------CGGGg-CUGCUA- -5'
15980 5' -58.9 NC_004065.1 + 196247 0.66 0.887055
Target:  5'- gUCgGGCCGAaaGCG---GUCCCGGCGAc -3'
miRNA:   3'- -GGaCCGGCU--CGCuuuCGGGGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 59572 0.66 0.887055
Target:  5'- --cGGCgGcAGCGAAGGCgccUCCGGCGGc -3'
miRNA:   3'- ggaCCGgC-UCGCUUUCG---GGGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 5380 0.66 0.885744
Target:  5'- cCCUGGUgagcaucgagugGAGCGAGAacaaCCCCGugGAg -3'
miRNA:   3'- -GGACCGg-----------CUCGCUUUc---GGGGCugCUa -5'
15980 5' -58.9 NC_004065.1 + 108964 0.66 0.88042
Target:  5'- aCCUGGggcaCGAcGCc-AGGCUCCGACGAa -3'
miRNA:   3'- -GGACCg---GCU-CGcuUUCGGGGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 90119 0.66 0.88042
Target:  5'- gCUGgcgccGCCGGcCGGAGGCCCCG-CGGc -3'
miRNA:   3'- gGAC-----CGGCUcGCUUUCGGGGCuGCUa -5'
15980 5' -58.9 NC_004065.1 + 79535 0.66 0.88042
Target:  5'- --cGGCCGAGCGGGAGaa--GGCGGUc -3'
miRNA:   3'- ggaCCGGCUCGCUUUCggggCUGCUA- -5'
15980 5' -58.9 NC_004065.1 + 77692 0.66 0.879069
Target:  5'- --cGaGCCGAGCGugGGCCCCGuguuccugucgcCGAUc -3'
miRNA:   3'- ggaC-CGGCUCGCuuUCGGGGCu-----------GCUA- -5'
15980 5' -58.9 NC_004065.1 + 24858 0.66 0.873584
Target:  5'- gUUGGC--GGCGAcggcGGCCUCGACGGUg -3'
miRNA:   3'- gGACCGgcUCGCUu---UCGGGGCUGCUA- -5'
15980 5' -58.9 NC_004065.1 + 61321 0.66 0.866552
Target:  5'- aCCUcGCacuCGAcgGCGAGAGCCgCGGCGAc -3'
miRNA:   3'- -GGAcCG---GCU--CGCUUUCGGgGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 102631 0.66 0.859328
Target:  5'- gCCUGGgaGAgGCGGGAGUCCucgaaCGGCGAg -3'
miRNA:   3'- -GGACCggCU-CGCUUUCGGG-----GCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 208007 0.66 0.859328
Target:  5'- gCCgUGGCCGGGUu--AGUgCCGGCGGc -3'
miRNA:   3'- -GG-ACCGGCUCGcuuUCGgGGCUGCUa -5'
15980 5' -58.9 NC_004065.1 + 182481 0.66 0.859328
Target:  5'- gCUGGgUGGGCGguGGUCCCaauugGGCGGUg -3'
miRNA:   3'- gGACCgGCUCGCuuUCGGGG-----CUGCUA- -5'
15980 5' -58.9 NC_004065.1 + 35382 0.66 0.859328
Target:  5'- gCUGGCCGAggcGUGGAccgucaucGGCgCCGugGGa -3'
miRNA:   3'- gGACCGGCU---CGCUU--------UCGgGGCugCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.