miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15982 3' -52.4 NC_004065.1 + 24568 0.66 0.997004
Target:  5'- uCGUCgggauCGCGCGGuccGCGCGU-GUCGUCGc -3'
miRNA:   3'- -GCAG-----GUGCGCUc--CGUGUAuUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 201389 0.66 0.997004
Target:  5'- gGUgCCACGuCGAcGCACAgaugCGUCGc -3'
miRNA:   3'- gCA-GGUGC-GCUcCGUGUauuaGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 97881 0.66 0.996494
Target:  5'- aCGUCCAgGCucGGCGCGUuGUUGauggCGa -3'
miRNA:   3'- -GCAGGUgCGcuCCGUGUAuUAGCa---GC- -5'
15982 3' -52.4 NC_004065.1 + 163014 0.66 0.996494
Target:  5'- uGcCCGCGCGGGGCcCGUAcacgggCGcCGa -3'
miRNA:   3'- gCaGGUGCGCUCCGuGUAUua----GCaGC- -5'
15982 3' -52.4 NC_004065.1 + 65262 0.66 0.996494
Target:  5'- cCGUCCucCGUGAGGuCugGgccUCGUCu -3'
miRNA:   3'- -GCAGGu-GCGCUCC-GugUauuAGCAGc -5'
15982 3' -52.4 NC_004065.1 + 192308 0.66 0.996439
Target:  5'- -cUUCACGCGcguguccGGGCACG-AcgCGUCGa -3'
miRNA:   3'- gcAGGUGCGC-------UCCGUGUaUuaGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 83716 0.66 0.995914
Target:  5'- --aUCGCGCaguaagacGAGGCAC-UGGUCGUCc -3'
miRNA:   3'- gcaGGUGCG--------CUCCGUGuAUUAGCAGc -5'
15982 3' -52.4 NC_004065.1 + 127658 0.66 0.995914
Target:  5'- gGUCCAUGUcuauGAGGCGCAcGAUCc--- -3'
miRNA:   3'- gCAGGUGCG----CUCCGUGUaUUAGcagc -5'
15982 3' -52.4 NC_004065.1 + 88554 0.66 0.995258
Target:  5'- gGUCCACGUagaaGAGGau----GUCGUCGa -3'
miRNA:   3'- gCAGGUGCG----CUCCguguauUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 20019 0.66 0.994973
Target:  5'- uGUUCGUGCGAccGGCACAcuggacaaugucaGAUCGUCGg -3'
miRNA:   3'- gCAGGUGCGCU--CCGUGUa------------UUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 197092 0.66 0.994519
Target:  5'- -aUCCGCGCGGgagccgaccGGCcCGUcuUCGUCGc -3'
miRNA:   3'- gcAGGUGCGCU---------CCGuGUAuuAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 17682 0.66 0.994519
Target:  5'- uCGUCCGuCGCGccaucgccguGGC-CGUcGUCGUCGc -3'
miRNA:   3'- -GCAGGU-GCGCu---------CCGuGUAuUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 23503 0.66 0.994361
Target:  5'- gCGUCCGCGCuaucgccgucuGGUGCGUGGUC-UCGc -3'
miRNA:   3'- -GCAGGUGCGcu---------CCGUGUAUUAGcAGC- -5'
15982 3' -52.4 NC_004065.1 + 33229 0.66 0.99369
Target:  5'- uGUCCGCaGaCGAGGguCugGUGuUCGUCGc -3'
miRNA:   3'- gCAGGUG-C-GCUCC--GugUAUuAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 67561 0.66 0.99369
Target:  5'- cCGgCCGCGCGAGGC-Cu---UCGcCGa -3'
miRNA:   3'- -GCaGGUGCGCUCCGuGuauuAGCaGC- -5'
15982 3' -52.4 NC_004065.1 + 110838 0.66 0.993512
Target:  5'- --aCCAgUGCGGGGCGCGggccgcccgCGUCGa -3'
miRNA:   3'- gcaGGU-GCGCUCCGUGUauua-----GCAGC- -5'
15982 3' -52.4 NC_004065.1 + 149745 0.67 0.992762
Target:  5'- gGUCCAgCGCGucGCGCAgcucgcgCGUCu -3'
miRNA:   3'- gCAGGU-GCGCucCGUGUauua---GCAGc -5'
15982 3' -52.4 NC_004065.1 + 30603 0.67 0.992762
Target:  5'- uCGUCCGCGUuccGAGGCagcgacGCGUGucCGUCc -3'
miRNA:   3'- -GCAGGUGCG---CUCCG------UGUAUuaGCAGc -5'
15982 3' -52.4 NC_004065.1 + 82161 0.67 0.991838
Target:  5'- -cUCCugGCGAGGCACcagccgaagcugggGAUCuuccuGUCGa -3'
miRNA:   3'- gcAGGugCGCUCCGUGua------------UUAG-----CAGC- -5'
15982 3' -52.4 NC_004065.1 + 194285 0.67 0.99173
Target:  5'- cCGUCCugcaacCGCGAucuGGCGCcgAGUCGcCa -3'
miRNA:   3'- -GCAGGu-----GCGCU---CCGUGuaUUAGCaGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.