Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15982 | 3' | -52.4 | NC_004065.1 | + | 40971 | 1.09 | 0.010791 |
Target: 5'- aCGUCCACGCGAGGCACAUAAUCGUCGc -3' miRNA: 3'- -GCAGGUGCGCUCCGUGUAUUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 106437 | 0.74 | 0.815549 |
Target: 5'- --cCCGCGCG-GGCGCuc-GUCGUCGa -3' miRNA: 3'- gcaGGUGCGCuCCGUGuauUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 200860 | 0.73 | 0.863697 |
Target: 5'- gCGUCgACG-GGGGCGCGggcgguggcgAAUCGUCGg -3' miRNA: 3'- -GCAGgUGCgCUCCGUGUa---------UUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 101505 | 0.72 | 0.885118 |
Target: 5'- cCGUCgACGCcgcgGAGGCAUc--GUCGUCGg -3' miRNA: 3'- -GCAGgUGCG----CUCCGUGuauUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 168171 | 0.72 | 0.898319 |
Target: 5'- -uUCCGCGCGGGGCGCGacagCGgcgCGa -3' miRNA: 3'- gcAGGUGCGCUCCGUGUauuaGCa--GC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 5698 | 0.7 | 0.941982 |
Target: 5'- aCGUUUACGUGAaugccacguGGUACGUAcacuggGUCGUCGg -3' miRNA: 3'- -GCAGGUGCGCU---------CCGUGUAU------UAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 99288 | 0.7 | 0.941982 |
Target: 5'- uCGcCCACGacgaGGGGCACAUAGgccccgaUGUCGa -3' miRNA: 3'- -GCaGGUGCg---CUCCGUGUAUUa------GCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 120332 | 0.7 | 0.95059 |
Target: 5'- uCG-CCGCGCGAucucGGCGgCGauGUCGUCGg -3' miRNA: 3'- -GCaGGUGCGCU----CCGU-GUauUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 167972 | 0.7 | 0.9583 |
Target: 5'- uGUCCACGauCGAGGCGgAUAacAUCuUCGa -3' miRNA: 3'- gCAGGUGC--GCUCCGUgUAU--UAGcAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 102430 | 0.69 | 0.965143 |
Target: 5'- gGUCCcgaGCaGCGguAGGCGCAcuuggcgaggUAGUCGUCGa -3' miRNA: 3'- gCAGG---UG-CGC--UCCGUGU----------AUUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 89925 | 0.69 | 0.96825 |
Target: 5'- aCGUCCAUgGCGAaccuGCACAcggcAUCGUCGa -3' miRNA: 3'- -GCAGGUG-CGCUc---CGUGUau--UAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 118088 | 0.69 | 0.971155 |
Target: 5'- uCGUCCAcCGCGAcGGCGgcgccCAUGGcgucucUCGUCGc -3' miRNA: 3'- -GCAGGU-GCGCU-CCGU-----GUAUU------AGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 36101 | 0.69 | 0.973865 |
Target: 5'- gGUCCGCGCGAcucaGGCGg--GAUCGaCGa -3' miRNA: 3'- gCAGGUGCGCU----CCGUguaUUAGCaGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 198556 | 0.69 | 0.975399 |
Target: 5'- gGUCCGCGCGcGGCACGgaccgcugcaUGUCu -3' miRNA: 3'- gCAGGUGCGCuCCGUGUauua------GCAGc -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 222401 | 0.68 | 0.978721 |
Target: 5'- gCG-CCACGUGgacGGGUcgACAUucGAUCGUCGg -3' miRNA: 3'- -GCaGGUGCGC---UCCG--UGUA--UUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 85786 | 0.68 | 0.980882 |
Target: 5'- aGUCgGCGacCGAGGCGCGaGAaccggCGUCGg -3' miRNA: 3'- gCAGgUGC--GCUCCGUGUaUUa----GCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 197901 | 0.68 | 0.982875 |
Target: 5'- uCGgCCAUGCaaucggcGGGCACGUAguccucAUCGUCGg -3' miRNA: 3'- -GCaGGUGCGc------UCCGUGUAU------UAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 203283 | 0.68 | 0.982875 |
Target: 5'- uCGUCCACGaCGAcGuGuCGCG-AAUCGUCGc -3' miRNA: 3'- -GCAGGUGC-GCU-C-C-GUGUaUUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 189018 | 0.68 | 0.984707 |
Target: 5'- uCGUUUugGCGccgaAGGUGCA--GUCGUCGu -3' miRNA: 3'- -GCAGGugCGC----UCCGUGUauUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 157043 | 0.68 | 0.986386 |
Target: 5'- uCGUCCuCGUGGGGgAuCAUccgcAUCGUCGa -3' miRNA: 3'- -GCAGGuGCGCUCCgU-GUAu---UAGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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