Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15982 | 3' | -52.4 | NC_004065.1 | + | 5698 | 0.7 | 0.941982 |
Target: 5'- aCGUUUACGUGAaugccacguGGUACGUAcacuggGUCGUCGg -3' miRNA: 3'- -GCAGGUGCGCU---------CCGUGUAU------UAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 7635 | 0.68 | 0.986386 |
Target: 5'- cCGUCCACGUGGcGCGCAguucaaccgGAUCGa-- -3' miRNA: 3'- -GCAGGUGCGCUcCGUGUa--------UUAGCagc -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 17682 | 0.66 | 0.994519 |
Target: 5'- uCGUCCGuCGCGccaucgccguGGC-CGUcGUCGUCGc -3' miRNA: 3'- -GCAGGU-GCGCu---------CCGuGUAuUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 20019 | 0.66 | 0.994973 |
Target: 5'- uGUUCGUGCGAccGGCACAcuggacaaugucaGAUCGUCGg -3' miRNA: 3'- gCAGGUGCGCU--CCGUGUa------------UUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 23503 | 0.66 | 0.994361 |
Target: 5'- gCGUCCGCGCuaucgccgucuGGUGCGUGGUC-UCGc -3' miRNA: 3'- -GCAGGUGCGcu---------CCGUGUAUUAGcAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 24568 | 0.66 | 0.997004 |
Target: 5'- uCGUCgggauCGCGCGGuccGCGCGU-GUCGUCGc -3' miRNA: 3'- -GCAG-----GUGCGCUc--CGUGUAuUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 30603 | 0.67 | 0.992762 |
Target: 5'- uCGUCCGCGUuccGAGGCagcgacGCGUGucCGUCc -3' miRNA: 3'- -GCAGGUGCG---CUCCG------UGUAUuaGCAGc -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 33229 | 0.66 | 0.99369 |
Target: 5'- uGUCCGCaGaCGAGGguCugGUGuUCGUCGc -3' miRNA: 3'- gCAGGUG-C-GCUCC--GugUAUuAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 36101 | 0.69 | 0.973865 |
Target: 5'- gGUCCGCGCGAcucaGGCGg--GAUCGaCGa -3' miRNA: 3'- gCAGGUGCGCU----CCGUguaUUAGCaGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 40971 | 1.09 | 0.010791 |
Target: 5'- aCGUCCACGCGAGGCACAUAAUCGUCGc -3' miRNA: 3'- -GCAGGUGCGCUCCGUGUAUUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 44672 | 0.67 | 0.989316 |
Target: 5'- uCGUCgGCGaCGAaGCG-AUGGUCGUCGa -3' miRNA: 3'- -GCAGgUGC-GCUcCGUgUAUUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 65262 | 0.66 | 0.996494 |
Target: 5'- cCGUCCucCGUGAGGuCugGgccUCGUCu -3' miRNA: 3'- -GCAGGu-GCGCUCC-GugUauuAGCAGc -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 67561 | 0.66 | 0.99369 |
Target: 5'- cCGgCCGCGCGAGGC-Cu---UCGcCGa -3' miRNA: 3'- -GCaGGUGCGCUCCGuGuauuAGCaGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 82161 | 0.67 | 0.991838 |
Target: 5'- -cUCCugGCGAGGCACcagccgaagcugggGAUCuuccuGUCGa -3' miRNA: 3'- gcAGGugCGCUCCGUGua------------UUAG-----CAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 83716 | 0.66 | 0.995914 |
Target: 5'- --aUCGCGCaguaagacGAGGCAC-UGGUCGUCc -3' miRNA: 3'- gcaGGUGCG--------CUCCGUGuAUUAGCAGc -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 85786 | 0.68 | 0.980882 |
Target: 5'- aGUCgGCGacCGAGGCGCGaGAaccggCGUCGg -3' miRNA: 3'- gCAGgUGC--GCUCCGUGUaUUa----GCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 88554 | 0.66 | 0.995258 |
Target: 5'- gGUCCACGUagaaGAGGau----GUCGUCGa -3' miRNA: 3'- gCAGGUGCG----CUCCguguauUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 89219 | 0.67 | 0.990583 |
Target: 5'- uGUCCACcaCGucGCucucguCGUAGUCGUCGg -3' miRNA: 3'- gCAGGUGc-GCucCGu-----GUAUUAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 89925 | 0.69 | 0.96825 |
Target: 5'- aCGUCCAUgGCGAaccuGCACAcggcAUCGUCGa -3' miRNA: 3'- -GCAGGUG-CGCUc---CGUGUau--UAGCAGC- -5' |
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15982 | 3' | -52.4 | NC_004065.1 | + | 97881 | 0.66 | 0.996494 |
Target: 5'- aCGUCCAgGCucGGCGCGUuGUUGauggCGa -3' miRNA: 3'- -GCAGGUgCGcuCCGUGUAuUAGCa---GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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