miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15982 3' -52.4 NC_004065.1 + 88554 0.66 0.995258
Target:  5'- gGUCCACGUagaaGAGGau----GUCGUCGa -3'
miRNA:   3'- gCAGGUGCG----CUCCguguauUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 89219 0.67 0.990583
Target:  5'- uGUCCACcaCGucGCucucguCGUAGUCGUCGg -3'
miRNA:   3'- gCAGGUGc-GCucCGu-----GUAUUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 194285 0.67 0.99173
Target:  5'- cCGUCCugcaacCGCGAucuGGCGCcgAGUCGcCa -3'
miRNA:   3'- -GCAGGu-----GCGCU---CCGUGuaUUAGCaGc -5'
15982 3' -52.4 NC_004065.1 + 82161 0.67 0.991838
Target:  5'- -cUCCugGCGAGGCACcagccgaagcugggGAUCuuccuGUCGa -3'
miRNA:   3'- gcAGGugCGCUCCGUGua------------UUAG-----CAGC- -5'
15982 3' -52.4 NC_004065.1 + 30603 0.67 0.992762
Target:  5'- uCGUCCGCGUuccGAGGCagcgacGCGUGucCGUCc -3'
miRNA:   3'- -GCAGGUGCG---CUCCG------UGUAUuaGCAGc -5'
15982 3' -52.4 NC_004065.1 + 149745 0.67 0.992762
Target:  5'- gGUCCAgCGCGucGCGCAgcucgcgCGUCu -3'
miRNA:   3'- gCAGGU-GCGCucCGUGUauua---GCAGc -5'
15982 3' -52.4 NC_004065.1 + 110838 0.66 0.993512
Target:  5'- --aCCAgUGCGGGGCGCGggccgcccgCGUCGa -3'
miRNA:   3'- gcaGGU-GCGCUCCGUGUauua-----GCAGC- -5'
15982 3' -52.4 NC_004065.1 + 33229 0.66 0.99369
Target:  5'- uGUCCGCaGaCGAGGguCugGUGuUCGUCGc -3'
miRNA:   3'- gCAGGUG-C-GCUCC--GugUAUuAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 17682 0.66 0.994519
Target:  5'- uCGUCCGuCGCGccaucgccguGGC-CGUcGUCGUCGc -3'
miRNA:   3'- -GCAGGU-GCGCu---------CCGuGUAuUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 44672 0.67 0.989316
Target:  5'- uCGUCgGCGaCGAaGCG-AUGGUCGUCGa -3'
miRNA:   3'- -GCAGgUGC-GCUcCGUgUAUUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 189018 0.68 0.984707
Target:  5'- uCGUUUugGCGccgaAGGUGCA--GUCGUCGu -3'
miRNA:   3'- -GCAGGugCGC----UCCGUGUauUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 197901 0.68 0.982875
Target:  5'- uCGgCCAUGCaaucggcGGGCACGUAguccucAUCGUCGg -3'
miRNA:   3'- -GCaGGUGCGc------UCCGUGUAU------UAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 200860 0.73 0.863697
Target:  5'- gCGUCgACG-GGGGCGCGggcgguggcgAAUCGUCGg -3'
miRNA:   3'- -GCAGgUGCgCUCCGUGUa---------UUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 5698 0.7 0.941982
Target:  5'- aCGUUUACGUGAaugccacguGGUACGUAcacuggGUCGUCGg -3'
miRNA:   3'- -GCAGGUGCGCU---------CCGUGUAU------UAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 167972 0.7 0.9583
Target:  5'- uGUCCACGauCGAGGCGgAUAacAUCuUCGa -3'
miRNA:   3'- gCAGGUGC--GCUCCGUgUAU--UAGcAGC- -5'
15982 3' -52.4 NC_004065.1 + 89925 0.69 0.96825
Target:  5'- aCGUCCAUgGCGAaccuGCACAcggcAUCGUCGa -3'
miRNA:   3'- -GCAGGUG-CGCUc---CGUGUau--UAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 118088 0.69 0.971155
Target:  5'- uCGUCCAcCGCGAcGGCGgcgccCAUGGcgucucUCGUCGc -3'
miRNA:   3'- -GCAGGU-GCGCU-CCGU-----GUAUU------AGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 198556 0.69 0.975399
Target:  5'- gGUCCGCGCGcGGCACGgaccgcugcaUGUCu -3'
miRNA:   3'- gCAGGUGCGCuCCGUGUauua------GCAGc -5'
15982 3' -52.4 NC_004065.1 + 222401 0.68 0.978721
Target:  5'- gCG-CCACGUGgacGGGUcgACAUucGAUCGUCGg -3'
miRNA:   3'- -GCaGGUGCGC---UCCG--UGUA--UUAGCAGC- -5'
15982 3' -52.4 NC_004065.1 + 85786 0.68 0.980882
Target:  5'- aGUCgGCGacCGAGGCGCGaGAaccggCGUCGg -3'
miRNA:   3'- gCAGgUGC--GCUCCGUGUaUUa----GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.