miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15982 5' -51.9 NC_004065.1 + 77967 0.66 0.997939
Target:  5'- gGUCGUgGAGCGcCGUgaaguaccucuUGACCUCggCGUGc -3'
miRNA:   3'- -CAGCAgCUUGU-GCA-----------ACUGGAG--GCACu -5'
15982 5' -51.9 NC_004065.1 + 176599 0.66 0.997939
Target:  5'- gGUCGgggcgaGAACgACGUgggGACUaUCCGUGAc -3'
miRNA:   3'- -CAGCag----CUUG-UGCAa--CUGG-AGGCACU- -5'
15982 5' -51.9 NC_004065.1 + 31579 0.66 0.997562
Target:  5'- -aCG-CGGACGCGgcGACgUCgGUGGg -3'
miRNA:   3'- caGCaGCUUGUGCaaCUGgAGgCACU- -5'
15982 5' -51.9 NC_004065.1 + 56602 0.66 0.997129
Target:  5'- cGUCGUCGAGCGagcaGgcGGCCgcggaUGUGGa -3'
miRNA:   3'- -CAGCAGCUUGUg---CaaCUGGag---GCACU- -5'
15982 5' -51.9 NC_004065.1 + 166986 0.66 0.996634
Target:  5'- aUCGUCGccucGCGCGccgGACagcuCUCCGUGGu -3'
miRNA:   3'- cAGCAGCu---UGUGCaa-CUG----GAGGCACU- -5'
15982 5' -51.9 NC_004065.1 + 54521 0.66 0.996634
Target:  5'- uUCGgCGGACGCGUucugucuacUGACggUCCGUGGa -3'
miRNA:   3'- cAGCaGCUUGUGCA---------ACUGg-AGGCACU- -5'
15982 5' -51.9 NC_004065.1 + 9286 0.66 0.996634
Target:  5'- -aCGUCGcACACGccGACCgcgaucgCCGUGu -3'
miRNA:   3'- caGCAGCuUGUGCaaCUGGa------GGCACu -5'
15982 5' -51.9 NC_004065.1 + 160674 0.66 0.996634
Target:  5'- uGUCGcCGAggGCAgGUUGcCCUCCGc-- -3'
miRNA:   3'- -CAGCaGCU--UGUgCAACuGGAGGCacu -5'
15982 5' -51.9 NC_004065.1 + 170605 0.67 0.994559
Target:  5'- uGUCGUCGGAgACaUUGGCCggcgucagggaCGUGAc -3'
miRNA:   3'- -CAGCAGCUUgUGcAACUGGag---------GCACU- -5'
15982 5' -51.9 NC_004065.1 + 206328 0.67 0.993904
Target:  5'- cUUGUCGGGCGgGUgucUGGCCUCgGUa- -3'
miRNA:   3'- cAGCAGCUUGUgCA---ACUGGAGgCAcu -5'
15982 5' -51.9 NC_004065.1 + 133247 0.67 0.993904
Target:  5'- aGUCGUCGAAgACGgccgcgaUGccGCCUCCGc-- -3'
miRNA:   3'- -CAGCAGCUUgUGCa------AC--UGGAGGCacu -5'
15982 5' -51.9 NC_004065.1 + 62042 0.68 0.986746
Target:  5'- uGUCGUCGAAgAUGUUauccGCCUCgauCGUGGa -3'
miRNA:   3'- -CAGCAGCUUgUGCAAc---UGGAG---GCACU- -5'
15982 5' -51.9 NC_004065.1 + 201990 0.68 0.98329
Target:  5'- cUCGUCGAGguCGUUGGCCgCCa--- -3'
miRNA:   3'- cAGCAGCUUguGCAACUGGaGGcacu -5'
15982 5' -51.9 NC_004065.1 + 31758 0.69 0.979194
Target:  5'- -gUGUCGGACGCGUUGcACUgCuCGUGGu -3'
miRNA:   3'- caGCAGCUUGUGCAAC-UGGaG-GCACU- -5'
15982 5' -51.9 NC_004065.1 + 166489 0.69 0.976886
Target:  5'- -aCGUCGAggcccaACACGU---UCUCCGUGAa -3'
miRNA:   3'- caGCAGCU------UGUGCAacuGGAGGCACU- -5'
15982 5' -51.9 NC_004065.1 + 120563 0.69 0.976886
Target:  5'- gGUCGgcgCGAGCGgGcggGACCUCCGg-- -3'
miRNA:   3'- -CAGCa--GCUUGUgCaa-CUGGAGGCacu -5'
15982 5' -51.9 NC_004065.1 + 116107 0.7 0.96884
Target:  5'- cGUCGUCGAcACGCGc-GAUCUCCGc-- -3'
miRNA:   3'- -CAGCAGCU-UGUGCaaCUGGAGGCacu -5'
15982 5' -51.9 NC_004065.1 + 41130 0.7 0.965762
Target:  5'- gGUCGUCGGGC-CGUgaGCUUCuCGUGGu -3'
miRNA:   3'- -CAGCAGCUUGuGCAacUGGAG-GCACU- -5'
15982 5' -51.9 NC_004065.1 + 103746 0.71 0.933279
Target:  5'- -gCGUCGGuucGCGCGgcggGGCCUCCG-GAc -3'
miRNA:   3'- caGCAGCU---UGUGCaa--CUGGAGGCaCU- -5'
15982 5' -51.9 NC_004065.1 + 83316 0.73 0.886047
Target:  5'- cGUCGUCGAGCGCGgcGucGCCcaugUCGUGGg -3'
miRNA:   3'- -CAGCAGCUUGUGCaaC--UGGa---GGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.