miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15983 3' -61.4 NC_004065.1 + 65725 0.66 0.770695
Target:  5'- --aGGACGCacacucguacaacuCGCUGCUGCCGCUGAg -3'
miRNA:   3'- gagUCUGCGgc------------GCGGCGGCGGUGAUU- -5'
15983 3' -61.4 NC_004065.1 + 58013 0.66 0.769803
Target:  5'- aUCuu-UGCCGCuuCCGCCGCCACc-- -3'
miRNA:   3'- gAGucuGCGGCGc-GGCGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 147891 0.66 0.769803
Target:  5'- -aCAG-CGuCCGCGCCGCCGgaUACg-- -3'
miRNA:   3'- gaGUCuGC-GGCGCGGCGGCg-GUGauu -5'
15983 3' -61.4 NC_004065.1 + 187294 0.66 0.769803
Target:  5'- -gCGGcCGCCGCGCUGCgaUCACUGGg -3'
miRNA:   3'- gaGUCuGCGGCGCGGCGgcGGUGAUU- -5'
15983 3' -61.4 NC_004065.1 + 166457 0.66 0.760819
Target:  5'- uCUCgauGGugGCCGagaacgucuCCGCCGCCACc-- -3'
miRNA:   3'- -GAG---UCugCGGCgc-------GGCGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 167935 0.66 0.760819
Target:  5'- ---cGAcCGCCGCuGCCGCUGCCGu--- -3'
miRNA:   3'- gaguCU-GCGGCG-CGGCGGCGGUgauu -5'
15983 3' -61.4 NC_004065.1 + 170459 0.66 0.760819
Target:  5'- -gCAGuCGCUGC-CCGUCGCCAUc-- -3'
miRNA:   3'- gaGUCuGCGGCGcGGCGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 32235 0.66 0.760818
Target:  5'- aCUCGGA-GCCGuCGgacUCGCCGCCAUc-- -3'
miRNA:   3'- -GAGUCUgCGGC-GC---GGCGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 195112 0.66 0.760818
Target:  5'- gUCAGcuCGCCgGCGgUGUCGCCGCa-- -3'
miRNA:   3'- gAGUCu-GCGG-CGCgGCGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 109788 0.66 0.751731
Target:  5'- -gCAGGCGCUaCGCCGCgGgCACg-- -3'
miRNA:   3'- gaGUCUGCGGcGCGGCGgCgGUGauu -5'
15983 3' -61.4 NC_004065.1 + 128779 0.66 0.751731
Target:  5'- --aGGGCGCCGuCGCCGgCGgCACc-- -3'
miRNA:   3'- gagUCUGCGGC-GCGGCgGCgGUGauu -5'
15983 3' -61.4 NC_004065.1 + 33768 0.66 0.751731
Target:  5'- --gAGugGCUGUGUCGCCGggaCCGCUu- -3'
miRNA:   3'- gagUCugCGGCGCGGCGGC---GGUGAuu -5'
15983 3' -61.4 NC_004065.1 + 154214 0.66 0.751731
Target:  5'- aUCuGuCGUCGUGCCaggugccucGCCGCCGCUc- -3'
miRNA:   3'- gAGuCuGCGGCGCGG---------CGGCGGUGAuu -5'
15983 3' -61.4 NC_004065.1 + 69465 0.66 0.751731
Target:  5'- -gCAGAUGUCGCGCCGgCUGCggUACg-- -3'
miRNA:   3'- gaGUCUGCGGCGCGGC-GGCG--GUGauu -5'
15983 3' -61.4 NC_004065.1 + 120585 0.66 0.751731
Target:  5'- gUgAGGCGauacaCGCGCCGCCagcGCgGCUGGu -3'
miRNA:   3'- gAgUCUGCg----GCGCGGCGG---CGgUGAUU- -5'
15983 3' -61.4 NC_004065.1 + 99941 0.66 0.742549
Target:  5'- -cCGGAcCGCCGCgGCgGCgGCUGCUGc -3'
miRNA:   3'- gaGUCU-GCGGCG-CGgCGgCGGUGAUu -5'
15983 3' -61.4 NC_004065.1 + 96941 0.66 0.742548
Target:  5'- aCUC--GCGCUGCGCCucuccccgucuGCUGCCGCg-- -3'
miRNA:   3'- -GAGucUGCGGCGCGG-----------CGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 135179 0.66 0.739776
Target:  5'- --gGGACuGCCcgagggacuguuggGCGCCGCCGCCGa--- -3'
miRNA:   3'- gagUCUG-CGG--------------CGCGGCGGCGGUgauu -5'
15983 3' -61.4 NC_004065.1 + 127611 0.66 0.736996
Target:  5'- gCUCGGgaccgGCGCucuacgugcaccgcuCGCGCUGCCGCUGCg-- -3'
miRNA:   3'- -GAGUC-----UGCG---------------GCGCGGCGGCGGUGauu -5'
15983 3' -61.4 NC_004065.1 + 119830 0.66 0.733279
Target:  5'- uCUCGacgggcGGCGgCGCGUCGCgGCCGCc-- -3'
miRNA:   3'- -GAGU------CUGCgGCGCGGCGgCGGUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.