miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15986 3' -54.8 NC_004065.1 + 127219 0.66 0.97001
Target:  5'- -gGAGCGGcgGCcgcgaggaucgGGCGcGGUGGCGggGAUg -3'
miRNA:   3'- gaCUCGCU--UG-----------UCGU-CCACCGCuaCUA- -5'
15986 3' -54.8 NC_004065.1 + 116362 0.66 0.97001
Target:  5'- -aGAGCGAGagGGCGGGgaacccGGCGcUGAg -3'
miRNA:   3'- gaCUCGCUUg-UCGUCCa-----CCGCuACUa -5'
15986 3' -54.8 NC_004065.1 + 36181 0.66 0.96699
Target:  5'- -cGaAGCGAcgGCAGCAggaauGGUGGCGGUu-- -3'
miRNA:   3'- gaC-UCGCU--UGUCGU-----CCACCGCUAcua -5'
15986 3' -54.8 NC_004065.1 + 184794 0.66 0.96699
Target:  5'- -cGGGCGGAgGaggacggugacGCAacGGUGGCGGUGGc -3'
miRNA:   3'- gaCUCGCUUgU-----------CGU--CCACCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 54197 0.66 0.96699
Target:  5'- -aGAGCGAuGCGGUAGGgacaucGGCGAa--- -3'
miRNA:   3'- gaCUCGCU-UGUCGUCCa-----CCGCUacua -5'
15986 3' -54.8 NC_004065.1 + 135132 0.66 0.963762
Target:  5'- -cGGGCGGGC-GCGGcG-GGUGAUGAc -3'
miRNA:   3'- gaCUCGCUUGuCGUC-CaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 19452 0.66 0.963762
Target:  5'- gCUG-GCGAugAGCGuGGUGGgGAcggGAg -3'
miRNA:   3'- -GACuCGCUugUCGU-CCACCgCUa--CUa -5'
15986 3' -54.8 NC_004065.1 + 131039 0.66 0.960319
Target:  5'- gUGGGCGAcccuguGgAGCAGGUguuucacccGGCGAUGc- -3'
miRNA:   3'- gACUCGCU------UgUCGUCCA---------CCGCUACua -5'
15986 3' -54.8 NC_004065.1 + 72504 0.66 0.960319
Target:  5'- -gGAGaaggugGAACGGCAGGUGGUGcUGc- -3'
miRNA:   3'- gaCUCg-----CUUGUCGUCCACCGCuACua -5'
15986 3' -54.8 NC_004065.1 + 120184 0.66 0.956657
Target:  5'- cCUGcGCGAuggccccccgccGCAGCAGGacGGCGAcGAg -3'
miRNA:   3'- -GACuCGCU------------UGUCGUCCa-CCGCUaCUa -5'
15986 3' -54.8 NC_004065.1 + 41109 0.66 0.956279
Target:  5'- gUGAG-GAGCGGCAGGUguccgggucgucgGGCcGUGAg -3'
miRNA:   3'- gACUCgCUUGUCGUCCA-------------CCGcUACUa -5'
15986 3' -54.8 NC_004065.1 + 131300 0.66 0.952771
Target:  5'- gUGAGCG-ACGGCgucaAGGUGGuCGA-GAa -3'
miRNA:   3'- gACUCGCuUGUCG----UCCACC-GCUaCUa -5'
15986 3' -54.8 NC_004065.1 + 157200 0.67 0.948658
Target:  5'- gUGGGgGGuuaguCAGCAGGUGGCGc---- -3'
miRNA:   3'- gACUCgCUu----GUCGUCCACCGCuacua -5'
15986 3' -54.8 NC_004065.1 + 23612 0.67 0.944313
Target:  5'- gUGAgGCGGGCAgGCGGGUGGaCGGg--- -3'
miRNA:   3'- gACU-CGCUUGU-CGUCCACC-GCUacua -5'
15986 3' -54.8 NC_004065.1 + 62370 0.67 0.929872
Target:  5'- --cGGCGGugGCGGCGGG-GGUGGUGGc -3'
miRNA:   3'- gacUCGCU--UGUCGUCCaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 142486 0.67 0.929872
Target:  5'- -gGAcGCGAGcCAGgGGGUGGCGGUc-- -3'
miRNA:   3'- gaCU-CGCUU-GUCgUCCACCGCUAcua -5'
15986 3' -54.8 NC_004065.1 + 143061 0.68 0.919058
Target:  5'- uCUGGGCGAGgGGCgcuucGGG-GGCGAcGAg -3'
miRNA:   3'- -GACUCGCUUgUCG-----UCCaCCGCUaCUa -5'
15986 3' -54.8 NC_004065.1 + 166463 0.68 0.913296
Target:  5'- -cGAGCacGGACAGCAcG-GGCGGUGAc -3'
miRNA:   3'- gaCUCG--CUUGUCGUcCaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 130721 0.68 0.913296
Target:  5'- -cGAGCGAuuACgAGgAGGgagGGCGGUGGg -3'
miRNA:   3'- gaCUCGCU--UG-UCgUCCa--CCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 131860 0.68 0.907298
Target:  5'- gCUGAGCcuaGGCGGC-GGUGGCGgcGGc -3'
miRNA:   3'- -GACUCGc--UUGUCGuCCACCGCuaCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.