Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15986 | 3' | -54.8 | NC_004065.1 | + | 19452 | 0.66 | 0.963762 |
Target: 5'- gCUG-GCGAugAGCGuGGUGGgGAcggGAg -3' miRNA: 3'- -GACuCGCUugUCGU-CCACCgCUa--CUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 135132 | 0.66 | 0.963762 |
Target: 5'- -cGGGCGGGC-GCGGcG-GGUGAUGAc -3' miRNA: 3'- gaCUCGCUUGuCGUC-CaCCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 36181 | 0.66 | 0.96699 |
Target: 5'- -cGaAGCGAcgGCAGCAggaauGGUGGCGGUu-- -3' miRNA: 3'- gaC-UCGCU--UGUCGU-----CCACCGCUAcua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 116362 | 0.66 | 0.97001 |
Target: 5'- -aGAGCGAGagGGCGGGgaacccGGCGcUGAg -3' miRNA: 3'- gaCUCGCUUg-UCGUCCa-----CCGCuACUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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