Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15986 | 3' | -54.8 | NC_004065.1 | + | 112532 | 0.68 | 0.901066 |
Target: 5'- -cGAGCGcuccgcuCAGCAGGUcGGCGAUc-- -3' miRNA: 3'- gaCUCGCuu-----GUCGUCCA-CCGCUAcua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 185455 | 0.68 | 0.901066 |
Target: 5'- -gGAGUGAugAugaAGGUGGUGGUGGUg -3' miRNA: 3'- gaCUCGCUugUcg-UCCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 197238 | 0.69 | 0.887912 |
Target: 5'- -gGAGaaaCGAugAGCGGGUGGCGugccGAUa -3' miRNA: 3'- gaCUC---GCUugUCGUCCACCGCua--CUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 182481 | 0.69 | 0.887912 |
Target: 5'- gCUGGGUGGGCGGU-GGUcccaauugGGCGGUGGUc -3' miRNA: 3'- -GACUCGCUUGUCGuCCA--------CCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 97047 | 0.69 | 0.873861 |
Target: 5'- -cGuGCGAGCucuccuGGUGuGGUGGCGAUGGUg -3' miRNA: 3'- gaCuCGCUUG------UCGU-CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 185404 | 0.69 | 0.873861 |
Target: 5'- -cGAGUGAu--GguGGUGGgGAUGAUg -3' miRNA: 3'- gaCUCGCUuguCguCCACCgCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 189832 | 0.69 | 0.858951 |
Target: 5'- aUG-GUGAACGGCAGGgcucugaGGUGGUGGa -3' miRNA: 3'- gACuCGCUUGUCGUCCa------CCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 104899 | 0.69 | 0.858951 |
Target: 5'- gCUGGGCG-ACGGCGcGGUGGUGccGGc -3' miRNA: 3'- -GACUCGCuUGUCGU-CCACCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 57467 | 0.7 | 0.843227 |
Target: 5'- gUG-GCGAuggcGCGGC-GGUGGUGGUGAg -3' miRNA: 3'- gACuCGCU----UGUCGuCCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 52496 | 0.7 | 0.835075 |
Target: 5'- uUGGGCGcuguUGGCGcgcGGUGGCGGUGGUg -3' miRNA: 3'- gACUCGCuu--GUCGU---CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 41914 | 0.7 | 0.82674 |
Target: 5'- -gGAGgGuGCaAGCuGGUGGCGGUGAc -3' miRNA: 3'- gaCUCgCuUG-UCGuCCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 44274 | 0.7 | 0.81823 |
Target: 5'- -cGAGCGAACgaccgGGCGGGcgGGCGA-GAg -3' miRNA: 3'- gaCUCGCUUG-----UCGUCCa-CCGCUaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 121825 | 0.71 | 0.800712 |
Target: 5'- ---uGCGGACGG-AGGUGGCGggGAUg -3' miRNA: 3'- gacuCGCUUGUCgUCCACCGCuaCUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 215311 | 0.71 | 0.791721 |
Target: 5'- gCUGGGUG-ACGGCguggaucugauGGGUGGCGGUGu- -3' miRNA: 3'- -GACUCGCuUGUCG-----------UCCACCGCUACua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 124708 | 0.71 | 0.782588 |
Target: 5'- -cGAGgGAACAG-AGGUGGCGAg--- -3' miRNA: 3'- gaCUCgCUUGUCgUCCACCGCUacua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 68482 | 0.72 | 0.754418 |
Target: 5'- cCUGAGCGAACGGCcgagcaggcucAGGUgaGGCGgcGGa -3' miRNA: 3'- -GACUCGCUUGUCG-----------UCCA--CCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 109118 | 0.72 | 0.754418 |
Target: 5'- -aGAGgGGACGG-AGGUGGCGggGAc -3' miRNA: 3'- gaCUCgCUUGUCgUCCACCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 152757 | 0.72 | 0.725284 |
Target: 5'- -gGGGUGGuaGCGGUAacGGUGGCGGUGAg -3' miRNA: 3'- gaCUCGCU--UGUCGU--CCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 88736 | 0.72 | 0.715401 |
Target: 5'- aUGAGCacguccacCAGCuuGGUGGCGAUGAUg -3' miRNA: 3'- gACUCGcuu-----GUCGu-CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 228310 | 0.72 | 0.705447 |
Target: 5'- uUGGGUgGGACGGCGGGUgcuuugGGCGGUGGg -3' miRNA: 3'- gACUCG-CUUGUCGUCCA------CCGCUACUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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