miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15986 3' -54.8 NC_004065.1 + 228310 0.72 0.705447
Target:  5'- uUGGGUgGGACGGCGGGUgcuuugGGCGGUGGg -3'
miRNA:   3'- gACUCG-CUUGUCGUCCA------CCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 225159 0.73 0.685364
Target:  5'- cCUGGGUGAccgagccgaggGCGGC-GGUGGUGGUGGUu -3'
miRNA:   3'- -GACUCGCU-----------UGUCGuCCACCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 215311 0.71 0.791721
Target:  5'- gCUGGGUG-ACGGCguggaucugauGGGUGGCGGUGu- -3'
miRNA:   3'- -GACUCGCuUGUCG-----------UCCACCGCUACua -5'
15986 3' -54.8 NC_004065.1 + 197238 0.69 0.887912
Target:  5'- -gGAGaaaCGAugAGCGGGUGGCGugccGAUa -3'
miRNA:   3'- gaCUC---GCUugUCGUCCACCGCua--CUA- -5'
15986 3' -54.8 NC_004065.1 + 189832 0.69 0.858951
Target:  5'- aUG-GUGAACGGCAGGgcucugaGGUGGUGGa -3'
miRNA:   3'- gACuCGCUUGUCGUCCa------CCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 185455 0.68 0.901066
Target:  5'- -gGAGUGAugAugaAGGUGGUGGUGGUg -3'
miRNA:   3'- gaCUCGCUugUcg-UCCACCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 185404 0.69 0.873861
Target:  5'- -cGAGUGAu--GguGGUGGgGAUGAUg -3'
miRNA:   3'- gaCUCGCUuguCguCCACCgCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 184794 0.66 0.96699
Target:  5'- -cGGGCGGAgGaggacggugacGCAacGGUGGCGGUGGc -3'
miRNA:   3'- gaCUCGCUUgU-----------CGU--CCACCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 182481 0.69 0.887912
Target:  5'- gCUGGGUGGGCGGU-GGUcccaauugGGCGGUGGUc -3'
miRNA:   3'- -GACUCGCUUGUCGuCCA--------CCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 166463 0.68 0.913296
Target:  5'- -cGAGCacGGACAGCAcG-GGCGGUGAc -3'
miRNA:   3'- gaCUCG--CUUGUCGUcCaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 157200 0.67 0.948658
Target:  5'- gUGGGgGGuuaguCAGCAGGUGGCGc---- -3'
miRNA:   3'- gACUCgCUu----GUCGUCCACCGCuacua -5'
15986 3' -54.8 NC_004065.1 + 152757 0.72 0.725284
Target:  5'- -gGGGUGGuaGCGGUAacGGUGGCGGUGAg -3'
miRNA:   3'- gaCUCGCU--UGUCGU--CCACCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 143061 0.68 0.919058
Target:  5'- uCUGGGCGAGgGGCgcuucGGG-GGCGAcGAg -3'
miRNA:   3'- -GACUCGCUUgUCG-----UCCaCCGCUaCUa -5'
15986 3' -54.8 NC_004065.1 + 142486 0.67 0.929872
Target:  5'- -gGAcGCGAGcCAGgGGGUGGCGGUc-- -3'
miRNA:   3'- gaCU-CGCUU-GUCgUCCACCGCUAcua -5'
15986 3' -54.8 NC_004065.1 + 135132 0.66 0.963762
Target:  5'- -cGGGCGGGC-GCGGcG-GGUGAUGAc -3'
miRNA:   3'- gaCUCGCUUGuCGUC-CaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 131860 0.68 0.907298
Target:  5'- gCUGAGCcuaGGCGGC-GGUGGCGgcGGc -3'
miRNA:   3'- -GACUCGc--UUGUCGuCCACCGCuaCUa -5'
15986 3' -54.8 NC_004065.1 + 131300 0.66 0.952771
Target:  5'- gUGAGCG-ACGGCgucaAGGUGGuCGA-GAa -3'
miRNA:   3'- gACUCGCuUGUCG----UCCACC-GCUaCUa -5'
15986 3' -54.8 NC_004065.1 + 131039 0.66 0.960319
Target:  5'- gUGGGCGAcccuguGgAGCAGGUguuucacccGGCGAUGc- -3'
miRNA:   3'- gACUCGCU------UgUCGUCCA---------CCGCUACua -5'
15986 3' -54.8 NC_004065.1 + 130721 0.68 0.913296
Target:  5'- -cGAGCGAuuACgAGgAGGgagGGCGGUGGg -3'
miRNA:   3'- gaCUCGCU--UG-UCgUCCa--CCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 127219 0.66 0.97001
Target:  5'- -gGAGCGGcgGCcgcgaggaucgGGCGcGGUGGCGggGAUg -3'
miRNA:   3'- gaCUCGCU--UG-----------UCGU-CCACCGCuaCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.