Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15986 | 3' | -54.8 | NC_004065.1 | + | 124708 | 0.71 | 0.782588 |
Target: 5'- -cGAGgGAACAG-AGGUGGCGAg--- -3' miRNA: 3'- gaCUCgCUUGUCgUCCACCGCUacua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 121825 | 0.71 | 0.800712 |
Target: 5'- ---uGCGGACGG-AGGUGGCGggGAUg -3' miRNA: 3'- gacuCGCUUGUCgUCCACCGCuaCUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 120184 | 0.66 | 0.956657 |
Target: 5'- cCUGcGCGAuggccccccgccGCAGCAGGacGGCGAcGAg -3' miRNA: 3'- -GACuCGCU------------UGUCGUCCa-CCGCUaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 116362 | 0.66 | 0.97001 |
Target: 5'- -aGAGCGAGagGGCGGGgaacccGGCGcUGAg -3' miRNA: 3'- gaCUCGCUUg-UCGUCCa-----CCGCuACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 112532 | 0.68 | 0.901066 |
Target: 5'- -cGAGCGcuccgcuCAGCAGGUcGGCGAUc-- -3' miRNA: 3'- gaCUCGCuu-----GUCGUCCA-CCGCUAcua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 109118 | 0.72 | 0.754418 |
Target: 5'- -aGAGgGGACGG-AGGUGGCGggGAc -3' miRNA: 3'- gaCUCgCUUGUCgUCCACCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 104899 | 0.69 | 0.858951 |
Target: 5'- gCUGGGCG-ACGGCGcGGUGGUGccGGc -3' miRNA: 3'- -GACUCGCuUGUCGU-CCACCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 104001 | 0.76 | 0.533629 |
Target: 5'- gUGGGCGAGCGGCucGUGGCGcUGGa -3' miRNA: 3'- gACUCGCUUGUCGucCACCGCuACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 97047 | 0.69 | 0.873861 |
Target: 5'- -cGuGCGAGCucuccuGGUGuGGUGGCGAUGGUg -3' miRNA: 3'- gaCuCGCUUG------UCGU-CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 88736 | 0.72 | 0.715401 |
Target: 5'- aUGAGCacguccacCAGCuuGGUGGCGAUGAUg -3' miRNA: 3'- gACUCGcuu-----GUCGu-CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 72504 | 0.66 | 0.960319 |
Target: 5'- -gGAGaaggugGAACGGCAGGUGGUGcUGc- -3' miRNA: 3'- gaCUCg-----CUUGUCGUCCACCGCuACua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 68482 | 0.72 | 0.754418 |
Target: 5'- cCUGAGCGAACGGCcgagcaggcucAGGUgaGGCGgcGGa -3' miRNA: 3'- -GACUCGCUUGUCG-----------UCCA--CCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 62370 | 0.67 | 0.929872 |
Target: 5'- --cGGCGGugGCGGCGGG-GGUGGUGGc -3' miRNA: 3'- gacUCGCU--UGUCGUCCaCCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 57467 | 0.7 | 0.843227 |
Target: 5'- gUG-GCGAuggcGCGGC-GGUGGUGGUGAg -3' miRNA: 3'- gACuCGCU----UGUCGuCCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 54197 | 0.66 | 0.96699 |
Target: 5'- -aGAGCGAuGCGGUAGGgacaucGGCGAa--- -3' miRNA: 3'- gaCUCGCU-UGUCGUCCa-----CCGCUacua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 52496 | 0.7 | 0.835075 |
Target: 5'- uUGGGCGcuguUGGCGcgcGGUGGCGGUGGUg -3' miRNA: 3'- gACUCGCuu--GUCGU---CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 44274 | 0.7 | 0.81823 |
Target: 5'- -cGAGCGAACgaccgGGCGGGcgGGCGA-GAg -3' miRNA: 3'- gaCUCGCUUG-----UCGUCCa-CCGCUaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 44019 | 1.05 | 0.008263 |
Target: 5'- cCUGAGCGAACAGCAGGUGGCGAUGAUc -3' miRNA: 3'- -GACUCGCUUGUCGUCCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 41914 | 0.7 | 0.82674 |
Target: 5'- -gGAGgGuGCaAGCuGGUGGCGGUGAc -3' miRNA: 3'- gaCUCgCuUG-UCGuCCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 41109 | 0.66 | 0.956279 |
Target: 5'- gUGAG-GAGCGGCAGGUguccgggucgucgGGCcGUGAg -3' miRNA: 3'- gACUCgCUUGUCGUCCA-------------CCGcUACUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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