miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15986 3' -54.8 NC_004065.1 + 135132 0.66 0.963762
Target:  5'- -cGGGCGGGC-GCGGcG-GGUGAUGAc -3'
miRNA:   3'- gaCUCGCUUGuCGUC-CaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 112532 0.68 0.901066
Target:  5'- -cGAGCGcuccgcuCAGCAGGUcGGCGAUc-- -3'
miRNA:   3'- gaCUCGCuu-----GUCGUCCA-CCGCUAcua -5'
15986 3' -54.8 NC_004065.1 + 166463 0.68 0.913296
Target:  5'- -cGAGCacGGACAGCAcG-GGCGGUGAc -3'
miRNA:   3'- gaCUCG--CUUGUCGUcCaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 62370 0.67 0.929872
Target:  5'- --cGGCGGugGCGGCGGG-GGUGGUGGc -3'
miRNA:   3'- gacUCGCU--UGUCGUCCaCCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 23612 0.67 0.944313
Target:  5'- gUGAgGCGGGCAgGCGGGUGGaCGGg--- -3'
miRNA:   3'- gACU-CGCUUGU-CGUCCACC-GCUacua -5'
15986 3' -54.8 NC_004065.1 + 131300 0.66 0.952771
Target:  5'- gUGAGCG-ACGGCgucaAGGUGGuCGA-GAa -3'
miRNA:   3'- gACUCGCuUGUCG----UCCACC-GCUaCUa -5'
15986 3' -54.8 NC_004065.1 + 41109 0.66 0.956279
Target:  5'- gUGAG-GAGCGGCAGGUguccgggucgucgGGCcGUGAg -3'
miRNA:   3'- gACUCgCUUGUCGUCCA-------------CCGcUACUa -5'
15986 3' -54.8 NC_004065.1 + 72504 0.66 0.960319
Target:  5'- -gGAGaaggugGAACGGCAGGUGGUGcUGc- -3'
miRNA:   3'- gaCUCg-----CUUGUCGUCCACCGCuACua -5'
15986 3' -54.8 NC_004065.1 + 19452 0.66 0.963762
Target:  5'- gCUG-GCGAugAGCGuGGUGGgGAcggGAg -3'
miRNA:   3'- -GACuCGCUugUCGU-CCACCgCUa--CUa -5'
15986 3' -54.8 NC_004065.1 + 197238 0.69 0.887912
Target:  5'- -gGAGaaaCGAugAGCGGGUGGCGugccGAUa -3'
miRNA:   3'- gaCUC---GCUugUCGUCCACCGCua--CUA- -5'
15986 3' -54.8 NC_004065.1 + 182481 0.69 0.887912
Target:  5'- gCUGGGUGGGCGGU-GGUcccaauugGGCGGUGGUc -3'
miRNA:   3'- -GACUCGCUUGUCGuCCA--------CCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 97047 0.69 0.873861
Target:  5'- -cGuGCGAGCucuccuGGUGuGGUGGCGAUGGUg -3'
miRNA:   3'- gaCuCGCUUG------UCGU-CCACCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 23570 0.73 0.665105
Target:  5'- -cGGGCGGGCAgGCAGGcgGGCuGGUGAa -3'
miRNA:   3'- gaCUCGCUUGU-CGUCCa-CCG-CUACUa -5'
15986 3' -54.8 NC_004065.1 + 225159 0.73 0.685364
Target:  5'- cCUGGGUGAccgagccgaggGCGGC-GGUGGUGGUGGUu -3'
miRNA:   3'- -GACUCGCU-----------UGUCGuCCACCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 88736 0.72 0.715401
Target:  5'- aUGAGCacguccacCAGCuuGGUGGCGAUGAUg -3'
miRNA:   3'- gACUCGcuu-----GUCGu-CCACCGCUACUA- -5'
15986 3' -54.8 NC_004065.1 + 152757 0.72 0.725284
Target:  5'- -gGGGUGGuaGCGGUAacGGUGGCGGUGAg -3'
miRNA:   3'- gaCUCGCU--UGUCGU--CCACCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 109118 0.72 0.754418
Target:  5'- -aGAGgGGACGG-AGGUGGCGggGAc -3'
miRNA:   3'- gaCUCgCUUGUCgUCCACCGCuaCUa -5'
15986 3' -54.8 NC_004065.1 + 121825 0.71 0.800712
Target:  5'- ---uGCGGACGG-AGGUGGCGggGAUg -3'
miRNA:   3'- gacuCGCUUGUCgUCCACCGCuaCUA- -5'
15986 3' -54.8 NC_004065.1 + 41914 0.7 0.82674
Target:  5'- -gGAGgGuGCaAGCuGGUGGCGGUGAc -3'
miRNA:   3'- gaCUCgCuUG-UCGuCCACCGCUACUa -5'
15986 3' -54.8 NC_004065.1 + 57467 0.7 0.843227
Target:  5'- gUG-GCGAuggcGCGGC-GGUGGUGGUGAg -3'
miRNA:   3'- gACuCGCU----UGUCGuCCACCGCUACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.