Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15986 | 3' | -54.8 | NC_004065.1 | + | 104001 | 0.76 | 0.533629 |
Target: 5'- gUGGGCGAGCGGCucGUGGCGcUGGa -3' miRNA: 3'- gACUCGCUUGUCGucCACCGCuACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 23612 | 0.67 | 0.944313 |
Target: 5'- gUGAgGCGGGCAgGCGGGUGGaCGGg--- -3' miRNA: 3'- gACU-CGCUUGU-CGUCCACC-GCUacua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 109118 | 0.72 | 0.754418 |
Target: 5'- -aGAGgGGACGG-AGGUGGCGggGAc -3' miRNA: 3'- gaCUCgCUUGUCgUCCACCGCuaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 127219 | 0.66 | 0.97001 |
Target: 5'- -gGAGCGGcgGCcgcgaggaucgGGCGcGGUGGCGggGAUg -3' miRNA: 3'- gaCUCGCU--UG-----------UCGU-CCACCGCuaCUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 152757 | 0.72 | 0.725284 |
Target: 5'- -gGGGUGGuaGCGGUAacGGUGGCGGUGAg -3' miRNA: 3'- gaCUCGCU--UGUCGU--CCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 121825 | 0.71 | 0.800712 |
Target: 5'- ---uGCGGACGG-AGGUGGCGggGAUg -3' miRNA: 3'- gacuCGCUUGUCgUCCACCGCuaCUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 41914 | 0.7 | 0.82674 |
Target: 5'- -gGAGgGuGCaAGCuGGUGGCGGUGAc -3' miRNA: 3'- gaCUCgCuUG-UCGuCCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 57467 | 0.7 | 0.843227 |
Target: 5'- gUG-GCGAuggcGCGGC-GGUGGUGGUGAg -3' miRNA: 3'- gACuCGCU----UGUCGuCCACCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 97047 | 0.69 | 0.873861 |
Target: 5'- -cGuGCGAGCucuccuGGUGuGGUGGCGAUGGUg -3' miRNA: 3'- gaCuCGCUUG------UCGU-CCACCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 182481 | 0.69 | 0.887912 |
Target: 5'- gCUGGGUGGGCGGU-GGUcccaauugGGCGGUGGUc -3' miRNA: 3'- -GACUCGCUUGUCGuCCA--------CCGCUACUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 197238 | 0.69 | 0.887912 |
Target: 5'- -gGAGaaaCGAugAGCGGGUGGCGugccGAUa -3' miRNA: 3'- gaCUC---GCUugUCGUCCACCGCua--CUA- -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 112532 | 0.68 | 0.901066 |
Target: 5'- -cGAGCGcuccgcuCAGCAGGUcGGCGAUc-- -3' miRNA: 3'- gaCUCGCuu-----GUCGUCCA-CCGCUAcua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 166463 | 0.68 | 0.913296 |
Target: 5'- -cGAGCacGGACAGCAcG-GGCGGUGAc -3' miRNA: 3'- gaCUCG--CUUGUCGUcCaCCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 62370 | 0.67 | 0.929872 |
Target: 5'- --cGGCGGugGCGGCGGG-GGUGGUGGc -3' miRNA: 3'- gacUCGCU--UGUCGUCCaCCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 131300 | 0.66 | 0.952771 |
Target: 5'- gUGAGCG-ACGGCgucaAGGUGGuCGA-GAa -3' miRNA: 3'- gACUCGCuUGUCG----UCCACC-GCUaCUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 41109 | 0.66 | 0.956279 |
Target: 5'- gUGAG-GAGCGGCAGGUguccgggucgucgGGCcGUGAg -3' miRNA: 3'- gACUCgCUUGUCGUCCA-------------CCGcUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 72504 | 0.66 | 0.960319 |
Target: 5'- -gGAGaaggugGAACGGCAGGUGGUGcUGc- -3' miRNA: 3'- gaCUCg-----CUUGUCGUCCACCGCuACua -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 19452 | 0.66 | 0.963762 |
Target: 5'- gCUG-GCGAugAGCGuGGUGGgGAcggGAg -3' miRNA: 3'- -GACuCGCUugUCGU-CCACCgCUa--CUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 135132 | 0.66 | 0.963762 |
Target: 5'- -cGGGCGGGC-GCGGcG-GGUGAUGAc -3' miRNA: 3'- gaCUCGCUUGuCGUC-CaCCGCUACUa -5' |
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15986 | 3' | -54.8 | NC_004065.1 | + | 36181 | 0.66 | 0.96699 |
Target: 5'- -cGaAGCGAcgGCAGCAggaauGGUGGCGGUu-- -3' miRNA: 3'- gaC-UCGCU--UGUCGU-----CCACCGCUAcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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