miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15988 3' -60.8 NC_004065.1 + 142477 0.65 0.830702
Target:  5'- ----gCGGGGACaGGcggcuaaccccgucUGGCacGCGCUGCg -3'
miRNA:   3'- caaugGCCCCUG-CC--------------ACCGc-CGCGACG- -5'
15988 3' -60.8 NC_004065.1 + 211938 0.66 0.825157
Target:  5'- -aUGCCGGccACGaGgcugcGGCGGuCGCUGCc -3'
miRNA:   3'- caAUGGCCccUGC-Ca----CCGCC-GCGACG- -5'
15988 3' -60.8 NC_004065.1 + 38542 0.66 0.825157
Target:  5'- --aACCuggGGGGACacgcgugcGUGGUGGUGCcGCa -3'
miRNA:   3'- caaUGG---CCCCUGc-------CACCGCCGCGaCG- -5'
15988 3' -60.8 NC_004065.1 + 7326 0.66 0.825157
Target:  5'- --aGCCGGuGGuacCGGacGCGGCGgaGCc -3'
miRNA:   3'- caaUGGCC-CCu--GCCacCGCCGCgaCG- -5'
15988 3' -60.8 NC_004065.1 + 163295 0.66 0.823558
Target:  5'- --cGCCGGGGuccgacggcacgggcGCcagccucuugacucuGGUGGCGGacggcagcuUGCUGCa -3'
miRNA:   3'- caaUGGCCCC---------------UG---------------CCACCGCC---------GCGACG- -5'
15988 3' -60.8 NC_004065.1 + 165189 0.66 0.820343
Target:  5'- --cGCCGGGGuagaagagcacguugGCGGgcgagauGUGGCGCaGCa -3'
miRNA:   3'- caaUGGCCCC---------------UGCCac-----CGCCGCGaCG- -5'
15988 3' -60.8 NC_004065.1 + 120879 0.66 0.817104
Target:  5'- cUUGcCCGGGGuCaG-GGCGGCGuCUcGCg -3'
miRNA:   3'- cAAU-GGCCCCuGcCaCCGCCGC-GA-CG- -5'
15988 3' -60.8 NC_004065.1 + 195808 0.66 0.817104
Target:  5'- --cGCUGaagggucggguGGGACGGUGaGaCGGCGCUcgaGCc -3'
miRNA:   3'- caaUGGC-----------CCCUGCCAC-C-GCCGCGA---CG- -5'
15988 3' -60.8 NC_004065.1 + 126130 0.66 0.817104
Target:  5'- -cUGCUGGauGCGGUcGGCG-UGCUGCg -3'
miRNA:   3'- caAUGGCCccUGCCA-CCGCcGCGACG- -5'
15988 3' -60.8 NC_004065.1 + 98018 0.66 0.817104
Target:  5'- --cACCGccGGCGcGUGGCGGuCGUUGUc -3'
miRNA:   3'- caaUGGCccCUGC-CACCGCC-GCGACG- -5'
15988 3' -60.8 NC_004065.1 + 19918 0.66 0.817104
Target:  5'- ----aCGGuaGCGGUGGUGGCGgUGg -3'
miRNA:   3'- caaugGCCccUGCCACCGCCGCgACg -5'
15988 3' -60.8 NC_004065.1 + 55403 0.66 0.81629
Target:  5'- --aACCGacGGGAguguuucucgucgUGGUGGUGGCG-UGCu -3'
miRNA:   3'- caaUGGC--CCCU-------------GCCACCGCCGCgACG- -5'
15988 3' -60.8 NC_004065.1 + 189747 0.66 0.811378
Target:  5'- -----aGGGGgagacgaugaggauuGCGGUGGCGGCaguggacGCUGUu -3'
miRNA:   3'- caauggCCCC---------------UGCCACCGCCG-------CGACG- -5'
15988 3' -60.8 NC_004065.1 + 177482 0.66 0.808903
Target:  5'- --cGgCGGGGGCGcacGGCGGgGCcGCc -3'
miRNA:   3'- caaUgGCCCCUGCca-CCGCCgCGaCG- -5'
15988 3' -60.8 NC_004065.1 + 68750 0.66 0.808903
Target:  5'- -cUGCCGGacucGGACaucGcGGCGGUGCUGg -3'
miRNA:   3'- caAUGGCC----CCUGc--CaCCGCCGCGACg -5'
15988 3' -60.8 NC_004065.1 + 36476 0.66 0.799718
Target:  5'- -cUACCGaGGGAUGGaucgggaUGGCccGGCGCg-- -3'
miRNA:   3'- caAUGGC-CCCUGCC-------ACCG--CCGCGacg -5'
15988 3' -60.8 NC_004065.1 + 129993 0.66 0.783477
Target:  5'- --cGCCgcGGGGGCGGcGGacgaGGCGaUGCu -3'
miRNA:   3'- caaUGG--CCCCUGCCaCCg---CCGCgACG- -5'
15988 3' -60.8 NC_004065.1 + 41490 0.66 0.783477
Target:  5'- --cGCCGGGGcguCGGgacGGgGaGCGCgcggGCg -3'
miRNA:   3'- caaUGGCCCCu--GCCa--CCgC-CGCGa---CG- -5'
15988 3' -60.8 NC_004065.1 + 109120 0.66 0.783477
Target:  5'- -----aGGGGACGGaggUGGCGGgGacgGCg -3'
miRNA:   3'- caauggCCCCUGCC---ACCGCCgCga-CG- -5'
15988 3' -60.8 NC_004065.1 + 84935 0.67 0.774751
Target:  5'- --cAUCGuGGuGuucuCGGUGGCGGCGCa-- -3'
miRNA:   3'- caaUGGC-CC-Cu---GCCACCGCCGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.