miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15988 5' -53.1 NC_004065.1 + 32220 0.66 0.993094
Target:  5'- cCCGCuCCACCACaaacucggaGCCgucggacucgccgcCAUCAUCGg -3'
miRNA:   3'- -GGCGuGGUGGUGg--------UGGaa------------GUAGUAGU- -5'
15988 5' -53.1 NC_004065.1 + 101446 0.66 0.992999
Target:  5'- aUGCGCCuuCGCCGCCgaCGUCGc-- -3'
miRNA:   3'- gGCGUGGugGUGGUGGaaGUAGUagu -5'
15988 5' -53.1 NC_004065.1 + 197589 0.66 0.992999
Target:  5'- gCUGCGCUACUACgAcCCUUCGaguaCGUCGa -3'
miRNA:   3'- -GGCGUGGUGGUGgU-GGAAGUa---GUAGU- -5'
15988 5' -53.1 NC_004065.1 + 108196 0.66 0.992999
Target:  5'- cCCaGaCAUCcCCGCCACCUcCGUCcgCAg -3'
miRNA:   3'- -GG-C-GUGGuGGUGGUGGAaGUAGuaGU- -5'
15988 5' -53.1 NC_004065.1 + 101199 0.66 0.992999
Target:  5'- uCgGCACgGCUAcuggcucguCCGCCUUCA-CGUCGg -3'
miRNA:   3'- -GgCGUGgUGGU---------GGUGGAAGUaGUAGU- -5'
15988 5' -53.1 NC_004065.1 + 119472 0.66 0.992999
Target:  5'- gCGgACCGCCGaagcguCCACCUUCAcCGaguUCAc -3'
miRNA:   3'- gGCgUGGUGGU------GGUGGAAGUaGU---AGU- -5'
15988 5' -53.1 NC_004065.1 + 150677 0.66 0.992999
Target:  5'- uCCaGCGCCG-CGCCGCCcUCGUC-UCc -3'
miRNA:   3'- -GG-CGUGGUgGUGGUGGaAGUAGuAGu -5'
15988 5' -53.1 NC_004065.1 + 134020 0.66 0.992999
Target:  5'- aCGCugCGCaGCCGCCgUCGUUAa-- -3'
miRNA:   3'- gGCGugGUGgUGGUGGaAGUAGUagu -5'
15988 5' -53.1 NC_004065.1 + 89710 0.66 0.992999
Target:  5'- -aGCGCCACCcacuuggagAUCugCgcCGUCGUCAg -3'
miRNA:   3'- ggCGUGGUGG---------UGGugGaaGUAGUAGU- -5'
15988 5' -53.1 NC_004065.1 + 205166 0.66 0.992999
Target:  5'- aCCGUcgagGCCGCCGUCGCCgcCAaCAUCGg -3'
miRNA:   3'- -GGCG----UGGUGGUGGUGGaaGUaGUAGU- -5'
15988 5' -53.1 NC_004065.1 + 178916 0.66 0.992999
Target:  5'- cCCGCucAUCAuccUCAUCAUCUUCAUCcUCAg -3'
miRNA:   3'- -GGCG--UGGU---GGUGGUGGAAGUAGuAGU- -5'
15988 5' -53.1 NC_004065.1 + 213343 0.66 0.992999
Target:  5'- uUCGaUACCACCGCCGCUcugUUCGaaGUCu -3'
miRNA:   3'- -GGC-GUGGUGGUGGUGG---AAGUagUAGu -5'
15988 5' -53.1 NC_004065.1 + 90156 0.66 0.992999
Target:  5'- uCCGUccuGCCGCCggcuccGCCGCCUcCGcCGUCGc -3'
miRNA:   3'- -GGCG---UGGUGG------UGGUGGAaGUaGUAGU- -5'
15988 5' -53.1 NC_004065.1 + 211952 0.66 0.992999
Target:  5'- gCUGCGgcggUCGCUGCCGCCaUCGUCGagaUCAg -3'
miRNA:   3'- -GGCGU----GGUGGUGGUGGaAGUAGU---AGU- -5'
15988 5' -53.1 NC_004065.1 + 206071 0.66 0.992707
Target:  5'- uUCGUcgagcgagggaucaGCCGCUAUCACaagaacagguaCUUCAUCAUCGa -3'
miRNA:   3'- -GGCG--------------UGGUGGUGGUG-----------GAAGUAGUAGU- -5'
15988 5' -53.1 NC_004065.1 + 96599 0.66 0.992707
Target:  5'- aCGCugCACUccccgggagaucugACC-CCUUCGUCcUCGu -3'
miRNA:   3'- gGCGugGUGG--------------UGGuGGAAGUAGuAGU- -5'
15988 5' -53.1 NC_004065.1 + 212744 0.66 0.991988
Target:  5'- gCCGCACCcgaCACCACCUcCggCGg-- -3'
miRNA:   3'- -GGCGUGGug-GUGGUGGAaGuaGUagu -5'
15988 5' -53.1 NC_004065.1 + 155429 0.66 0.991988
Target:  5'- uCgGcCGCCACCGCCACCgaCggCAcCAa -3'
miRNA:   3'- -GgC-GUGGUGGUGGUGGaaGuaGUaGU- -5'
15988 5' -53.1 NC_004065.1 + 155056 0.66 0.991988
Target:  5'- cCUGCACCAguucgucuuCCACUuccCCUUCggCAUCc -3'
miRNA:   3'- -GGCGUGGU---------GGUGGu--GGAAGuaGUAGu -5'
15988 5' -53.1 NC_004065.1 + 130367 0.66 0.991988
Target:  5'- uCgGCGCCgcGCCGCCGgCUUCucCAUCu -3'
miRNA:   3'- -GgCGUGG--UGGUGGUgGAAGuaGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.