miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1599 5' -59.2 NC_001347.2 + 166955 0.66 0.861875
Target:  5'- gCUCGGgCAacaauacacggcACAGCUGAaugagugcgaaaagaCGCGGCGAAc -3'
miRNA:   3'- -GAGCCgGU------------UGUCGGCUa--------------GCGCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 134350 0.66 0.861144
Target:  5'- cCUCGGCCAGgGGguaCCGAg-GCGGUGc- -3'
miRNA:   3'- -GAGCCGGUUgUC---GGCUagCGCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 76614 0.66 0.861144
Target:  5'- cCUCGcaGgCGGCGGCUGcggcCGCGGCGGAg -3'
miRNA:   3'- -GAGC--CgGUUGUCGGCua--GCGCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 154898 0.66 0.861144
Target:  5'- --aGGUCGcagGCGGCCGAagCGCcGGCGGGu -3'
miRNA:   3'- gagCCGGU---UGUCGGCUa-GCG-CCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 202075 0.66 0.860411
Target:  5'- -gUGGCCGACAGUuugauggaguuugUGAcUCGCGGCa-- -3'
miRNA:   3'- gaGCCGGUUGUCG-------------GCU-AGCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 135268 0.66 0.853728
Target:  5'- --gGGCCAGCaAGCCGcgacgguUCG-GGCGGAg -3'
miRNA:   3'- gagCCGGUUG-UCGGCu------AGCgCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 77028 0.66 0.853728
Target:  5'- --gGGCCAACGGUCGA-CGCagGGCa-- -3'
miRNA:   3'- gagCCGGUUGUCGGCUaGCG--CCGcuu -5'
1599 5' -59.2 NC_001347.2 + 4803 0.66 0.853728
Target:  5'- -gCGGCUGACAGCaCGA--GCGGCa-- -3'
miRNA:   3'- gaGCCGGUUGUCG-GCUagCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 108273 0.66 0.846126
Target:  5'- -aCGuGCUGAaAGCCGuguuuaGUCGCGGCGAu -3'
miRNA:   3'- gaGC-CGGUUgUCGGC------UAGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 176177 0.66 0.846126
Target:  5'- -aUGGCCAACAGCC---UGUGGCa-- -3'
miRNA:   3'- gaGCCGGUUGUCGGcuaGCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 71664 0.66 0.845356
Target:  5'- -gCGGCCGGCGGCCucuuguuuucguuGuccccuUCGCGGgGGAc -3'
miRNA:   3'- gaGCCGGUUGUCGG-------------Cu-----AGCGCCgCUU- -5'
1599 5' -59.2 NC_001347.2 + 159454 0.66 0.841479
Target:  5'- -gCGGCC-GCGGCCGcUCgaugacgaugucggcGCGGCGGc -3'
miRNA:   3'- gaGCCGGuUGUCGGCuAG---------------CGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 85483 0.66 0.838346
Target:  5'- aUCGGCCAgguacucgcGCAGCgGuUCG-GGCGGc -3'
miRNA:   3'- gAGCCGGU---------UGUCGgCuAGCgCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 66898 0.66 0.829588
Target:  5'- --gGGCCGgggaggaGCAGCugguguuuCGAUUGCGGCGGc -3'
miRNA:   3'- gagCCGGU-------UGUCG--------GCUAGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 184954 0.67 0.822273
Target:  5'- gUCGGCCGGCgugGGCgGcUCGCGGaGAc -3'
miRNA:   3'- gAGCCGGUUG---UCGgCuAGCGCCgCUu -5'
1599 5' -59.2 NC_001347.2 + 79205 0.67 0.813994
Target:  5'- gUCGGCCGAUuucgaaauggaGGCCcugauGAUcCGCGGCGu- -3'
miRNA:   3'- gAGCCGGUUG-----------UCGG-----CUA-GCGCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 189634 0.67 0.796988
Target:  5'- uUCGGCuCGACAGCCG-UCagccuCGGCGu- -3'
miRNA:   3'- gAGCCG-GUUGUCGGCuAGc----GCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 142576 0.67 0.788275
Target:  5'- gUCGGCgGgaGCAGCgGGg-GCGGCGGGg -3'
miRNA:   3'- gAGCCGgU--UGUCGgCUagCGCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 47456 0.67 0.788275
Target:  5'- aUCGGCCucGACGaaCGAgaCGCGGCGAc -3'
miRNA:   3'- gAGCCGG--UUGUcgGCUa-GCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 62768 0.67 0.788275
Target:  5'- -gCGGCCGACcccGCCG-UUGCGGCc-- -3'
miRNA:   3'- gaGCCGGUUGu--CGGCuAGCGCCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.