miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1599 5' -59.2 NC_001347.2 + 166518 1.05 0.003908
Target:  5'- uCUCGGCCAACAGCCGAUCGCGGCGAAc -3'
miRNA:   3'- -GAGCCGGUUGUCGGCUAGCGCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 156656 0.79 0.204953
Target:  5'- cCUCGGCCGccgccgccacccaugGCGGCgGGUCGUGGCGGc -3'
miRNA:   3'- -GAGCCGGU---------------UGUCGgCUAGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 47106 0.77 0.274659
Target:  5'- gUCGGCCGACAuGCCGAUgguauggGCGGCGGc -3'
miRNA:   3'- gAGCCGGUUGU-CGGCUAg------CGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 37997 0.77 0.30045
Target:  5'- gCUCGGgCAGCAGCCGccgCGCGGCc-- -3'
miRNA:   3'- -GAGCCgGUUGUCGGCua-GCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 157208 0.74 0.396885
Target:  5'- aUCGGCCGcggugcgcuGCAGCCGGaggaaGCGGCGGu -3'
miRNA:   3'- gAGCCGGU---------UGUCGGCUag---CGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 31675 0.72 0.511077
Target:  5'- gUCGGCUggUcgGGCCG-UCGCGGaCGAAa -3'
miRNA:   3'- gAGCCGGuuG--UCGGCuAGCGCC-GCUU- -5'
1599 5' -59.2 NC_001347.2 + 178888 0.71 0.55859
Target:  5'- cCUCGucGCCGccgcuGCcGCCGGUCGUGGUGAAg -3'
miRNA:   3'- -GAGC--CGGU-----UGuCGGCUAGCGCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 20756 0.71 0.568253
Target:  5'- gUUGGCCAACAGCCuGAcgGCGGCc-- -3'
miRNA:   3'- gAGCCGGUUGUCGG-CUagCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 158716 0.7 0.617075
Target:  5'- -gCGGCCAcauuguGCAGCagGcgCGCGGCGGu -3'
miRNA:   3'- gaGCCGGU------UGUCGg-CuaGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 30598 0.69 0.685652
Target:  5'- -gCGGCUuccuGCGGCCGGcCGCGGUGc- -3'
miRNA:   3'- gaGCCGGu---UGUCGGCUaGCGCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 126890 0.69 0.695347
Target:  5'- -cCGGCUAcgGCGGCCGcAUCGaCGGCa-- -3'
miRNA:   3'- gaGCCGGU--UGUCGGC-UAGC-GCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 225534 0.69 0.704992
Target:  5'- aUCGGCC---GGCUGGUCGuCGGCGc- -3'
miRNA:   3'- gAGCCGGuugUCGGCUAGC-GCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 111069 0.69 0.714581
Target:  5'- -cCGGCCcGCuacCCGAUCGUGuGCGAAu -3'
miRNA:   3'- gaGCCGGuUGuc-GGCUAGCGC-CGCUU- -5'
1599 5' -59.2 NC_001347.2 + 153902 0.69 0.714581
Target:  5'- aUCGGCCAAuacCAGCUGAaUGCGGUc-- -3'
miRNA:   3'- gAGCCGGUU---GUCGGCUaGCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 163290 0.68 0.724105
Target:  5'- -aCGGCgucaaaaAAC-GUCGGUCGCGGCGAc -3'
miRNA:   3'- gaGCCGg------UUGuCGGCUAGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 125537 0.68 0.724105
Target:  5'- cCUCGGCCGcCGGCCGcgUGUgaGGCa-- -3'
miRNA:   3'- -GAGCCGGUuGUCGGCuaGCG--CCGcuu -5'
1599 5' -59.2 NC_001347.2 + 168532 0.68 0.742926
Target:  5'- gCUCGGCgGcguACAGCgGGUCGCGcGCc-- -3'
miRNA:   3'- -GAGCCGgU---UGUCGgCUAGCGC-CGcuu -5'
1599 5' -59.2 NC_001347.2 + 81591 0.68 0.752207
Target:  5'- aUC-GCCGcCGGCCGGUCGCucGCGAAa -3'
miRNA:   3'- gAGcCGGUuGUCGGCUAGCGc-CGCUU- -5'
1599 5' -59.2 NC_001347.2 + 2389 0.68 0.752207
Target:  5'- gUCGGCgcccGCcGCCGAggccgCGCGGCGGc -3'
miRNA:   3'- gAGCCGgu--UGuCGGCUa----GCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 228712 0.68 0.761391
Target:  5'- gUCGGCC--CAGUCGccaccgcCGCGGCGGAu -3'
miRNA:   3'- gAGCCGGuuGUCGGCua-----GCGCCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.