miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1599 5' -59.2 NC_001347.2 + 2389 0.68 0.752207
Target:  5'- gUCGGCgcccGCcGCCGAggccgCGCGGCGGc -3'
miRNA:   3'- gAGCCGgu--UGuCGGCUa----GCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 4803 0.66 0.853728
Target:  5'- -gCGGCUGACAGCaCGA--GCGGCa-- -3'
miRNA:   3'- gaGCCGGUUGUCG-GCUagCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 20756 0.71 0.568253
Target:  5'- gUUGGCCAACAGCCuGAcgGCGGCc-- -3'
miRNA:   3'- gAGCCGGUUGUCGG-CUagCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 30598 0.69 0.685652
Target:  5'- -gCGGCUuccuGCGGCCGGcCGCGGUGc- -3'
miRNA:   3'- gaGCCGGu---UGUCGGCUaGCGCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 31675 0.72 0.511077
Target:  5'- gUCGGCUggUcgGGCCG-UCGCGGaCGAAa -3'
miRNA:   3'- gAGCCGGuuG--UCGGCuAGCGCC-GCUU- -5'
1599 5' -59.2 NC_001347.2 + 37997 0.77 0.30045
Target:  5'- gCUCGGgCAGCAGCCGccgCGCGGCc-- -3'
miRNA:   3'- -GAGCCgGUUGUCGGCua-GCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 39492 0.67 0.776756
Target:  5'- -cCGGCCccGCGGCCGcgaccaaggggcggGgggCGCGGCGAc -3'
miRNA:   3'- gaGCCGGu-UGUCGGC--------------Ua--GCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 47106 0.77 0.274659
Target:  5'- gUCGGCCGACAuGCCGAUgguauggGCGGCGGc -3'
miRNA:   3'- gAGCCGGUUGU-CGGCUAg------CGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 47456 0.67 0.788275
Target:  5'- aUCGGCCucGACGaaCGAgaCGCGGCGAc -3'
miRNA:   3'- gAGCCGG--UUGUcgGCUa-GCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 62768 0.67 0.788275
Target:  5'- -gCGGCCGACcccGCCG-UUGCGGCc-- -3'
miRNA:   3'- gaGCCGGUUGu--CGGCuAGCGCCGcuu -5'
1599 5' -59.2 NC_001347.2 + 66898 0.66 0.829588
Target:  5'- --gGGCCGgggaggaGCAGCugguguuuCGAUUGCGGCGGc -3'
miRNA:   3'- gagCCGGU-------UGUCG--------GCUAGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 71664 0.66 0.845356
Target:  5'- -gCGGCCGGCGGCCucuuguuuucguuGuccccuUCGCGGgGGAc -3'
miRNA:   3'- gaGCCGGUUGUCGG-------------Cu-----AGCGCCgCUU- -5'
1599 5' -59.2 NC_001347.2 + 76614 0.66 0.861144
Target:  5'- cCUCGcaGgCGGCGGCUGcggcCGCGGCGGAg -3'
miRNA:   3'- -GAGC--CgGUUGUCGGCua--GCGCCGCUU- -5'
1599 5' -59.2 NC_001347.2 + 77028 0.66 0.853728
Target:  5'- --gGGCCAACGGUCGA-CGCagGGCa-- -3'
miRNA:   3'- gagCCGGUUGUCGGCUaGCG--CCGcuu -5'
1599 5' -59.2 NC_001347.2 + 79205 0.67 0.813994
Target:  5'- gUCGGCCGAUuucgaaauggaGGCCcugauGAUcCGCGGCGu- -3'
miRNA:   3'- gAGCCGGUUG-----------UCGG-----CUA-GCGCCGCuu -5'
1599 5' -59.2 NC_001347.2 + 81591 0.68 0.752207
Target:  5'- aUC-GCCGcCGGCCGGUCGCucGCGAAa -3'
miRNA:   3'- gAGcCGGUuGUCGGCUAGCGc-CGCUU- -5'
1599 5' -59.2 NC_001347.2 + 85483 0.66 0.838346
Target:  5'- aUCGGCCAgguacucgcGCAGCgGuUCG-GGCGGc -3'
miRNA:   3'- gAGCCGGU---------UGUCGgCuAGCgCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 108273 0.66 0.846126
Target:  5'- -aCGuGCUGAaAGCCGuguuuaGUCGCGGCGAu -3'
miRNA:   3'- gaGC-CGGUUgUCGGC------UAGCGCCGCUu -5'
1599 5' -59.2 NC_001347.2 + 111069 0.69 0.714581
Target:  5'- -cCGGCCcGCuacCCGAUCGUGuGCGAAu -3'
miRNA:   3'- gaGCCGGuUGuc-GGCUAGCGC-CGCUU- -5'
1599 5' -59.2 NC_001347.2 + 112629 0.67 0.787396
Target:  5'- gUCGcGCCGACGGUaauaggccggugaUGGUgGCGGCGGc -3'
miRNA:   3'- gAGC-CGGUUGUCG-------------GCUAgCGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.