Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1599 | 5' | -59.2 | NC_001347.2 | + | 228712 | 0.68 | 0.761391 |
Target: 5'- gUCGGCC--CAGUCGccaccgcCGCGGCGGAu -3' miRNA: 3'- gAGCCGGuuGUCGGCua-----GCGCCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 225534 | 0.69 | 0.704992 |
Target: 5'- aUCGGCC---GGCUGGUCGuCGGCGc- -3' miRNA: 3'- gAGCCGGuugUCGGCUAGC-GCCGCuu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 202075 | 0.66 | 0.860411 |
Target: 5'- -gUGGCCGACAGUuugauggaguuugUGAcUCGCGGCa-- -3' miRNA: 3'- gaGCCGGUUGUCG-------------GCU-AGCGCCGcuu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 189634 | 0.67 | 0.796988 |
Target: 5'- uUCGGCuCGACAGCCG-UCagccuCGGCGu- -3' miRNA: 3'- gAGCCG-GUUGUCGGCuAGc----GCCGCuu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 184954 | 0.67 | 0.822273 |
Target: 5'- gUCGGCCGGCgugGGCgGcUCGCGGaGAc -3' miRNA: 3'- gAGCCGGUUG---UCGgCuAGCGCCgCUu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 178888 | 0.71 | 0.55859 |
Target: 5'- cCUCGucGCCGccgcuGCcGCCGGUCGUGGUGAAg -3' miRNA: 3'- -GAGC--CGGU-----UGuCGGCUAGCGCCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 176177 | 0.66 | 0.846126 |
Target: 5'- -aUGGCCAACAGCC---UGUGGCa-- -3' miRNA: 3'- gaGCCGGUUGUCGGcuaGCGCCGcuu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 168532 | 0.68 | 0.742926 |
Target: 5'- gCUCGGCgGcguACAGCgGGUCGCGcGCc-- -3' miRNA: 3'- -GAGCCGgU---UGUCGgCUAGCGC-CGcuu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 166955 | 0.66 | 0.861875 |
Target: 5'- gCUCGGgCAacaauacacggcACAGCUGAaugagugcgaaaagaCGCGGCGAAc -3' miRNA: 3'- -GAGCCgGU------------UGUCGGCUa--------------GCGCCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 166518 | 1.05 | 0.003908 |
Target: 5'- uCUCGGCCAACAGCCGAUCGCGGCGAAc -3' miRNA: 3'- -GAGCCGGUUGUCGGCUAGCGCCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 163290 | 0.68 | 0.724105 |
Target: 5'- -aCGGCgucaaaaAAC-GUCGGUCGCGGCGAc -3' miRNA: 3'- gaGCCGg------UUGuCGGCUAGCGCCGCUu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 159454 | 0.66 | 0.841479 |
Target: 5'- -gCGGCC-GCGGCCGcUCgaugacgaugucggcGCGGCGGc -3' miRNA: 3'- gaGCCGGuUGUCGGCuAG---------------CGCCGCUu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 158716 | 0.7 | 0.617075 |
Target: 5'- -gCGGCCAcauuguGCAGCagGcgCGCGGCGGu -3' miRNA: 3'- gaGCCGGU------UGUCGg-CuaGCGCCGCUu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 157208 | 0.74 | 0.396885 |
Target: 5'- aUCGGCCGcggugcgcuGCAGCCGGaggaaGCGGCGGu -3' miRNA: 3'- gAGCCGGU---------UGUCGGCUag---CGCCGCUu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 156656 | 0.79 | 0.204953 |
Target: 5'- cCUCGGCCGccgccgccacccaugGCGGCgGGUCGUGGCGGc -3' miRNA: 3'- -GAGCCGGU---------------UGUCGgCUAGCGCCGCUu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 154898 | 0.66 | 0.861144 |
Target: 5'- --aGGUCGcagGCGGCCGAagCGCcGGCGGGu -3' miRNA: 3'- gagCCGGU---UGUCGGCUa-GCG-CCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 153902 | 0.69 | 0.714581 |
Target: 5'- aUCGGCCAAuacCAGCUGAaUGCGGUc-- -3' miRNA: 3'- gAGCCGGUU---GUCGGCUaGCGCCGcuu -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 142576 | 0.67 | 0.788275 |
Target: 5'- gUCGGCgGgaGCAGCgGGg-GCGGCGGGg -3' miRNA: 3'- gAGCCGgU--UGUCGgCUagCGCCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 135268 | 0.66 | 0.853728 |
Target: 5'- --gGGCCAGCaAGCCGcgacgguUCG-GGCGGAg -3' miRNA: 3'- gagCCGGUUG-UCGGCu------AGCgCCGCUU- -5' |
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1599 | 5' | -59.2 | NC_001347.2 | + | 134350 | 0.66 | 0.861144 |
Target: 5'- cCUCGGCCAGgGGguaCCGAg-GCGGUGc- -3' miRNA: 3'- -GAGCCGGUUgUC---GGCUagCGCCGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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