miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15993 3' -52.5 NC_004065.1 + 223877 0.66 0.996071
Target:  5'- gGCGAUcaCGGAGAUGaCGAGUAGGAGc -3'
miRNA:   3'- -UGCUGuaGCUUCUGCcGCUUGUCCUC- -5'
15993 3' -52.5 NC_004065.1 + 142837 0.66 0.996071
Target:  5'- aACGACG-CGGAGGaGGCGuugAGGGGg -3'
miRNA:   3'- -UGCUGUaGCUUCUgCCGCuugUCCUC- -5'
15993 3' -52.5 NC_004065.1 + 130474 0.66 0.996071
Target:  5'- cACGGcCGUCcgccGCGGCGAgACGGGAGc -3'
miRNA:   3'- -UGCU-GUAGcuucUGCCGCU-UGUCCUC- -5'
15993 3' -52.5 NC_004065.1 + 183246 0.66 0.996011
Target:  5'- gGCGACGaacggucugaaguUCGggGuguCGGgGGACcuGGAGg -3'
miRNA:   3'- -UGCUGU-------------AGCuuCu--GCCgCUUGu-CCUC- -5'
15993 3' -52.5 NC_004065.1 + 144507 0.66 0.995433
Target:  5'- gGCGACuUCGGGcGCGGCG-ACcGGAa -3'
miRNA:   3'- -UGCUGuAGCUUcUGCCGCuUGuCCUc -5'
15993 3' -52.5 NC_004065.1 + 31296 0.66 0.995433
Target:  5'- uACGACAcgCGAGGGuuGCGAggauACGGGGu -3'
miRNA:   3'- -UGCUGUa-GCUUCUgcCGCU----UGUCCUc -5'
15993 3' -52.5 NC_004065.1 + 133695 0.66 0.995433
Target:  5'- -aGACAUCGAGGACGaGCccuuGGACcccgagacGGAGu -3'
miRNA:   3'- ugCUGUAGCUUCUGC-CG----CUUGu-------CCUC- -5'
15993 3' -52.5 NC_004065.1 + 205433 0.66 0.995433
Target:  5'- gGCGGCggCGguGGCGGCGAcgacacGCGcGGAc -3'
miRNA:   3'- -UGCUGuaGCuuCUGCCGCU------UGU-CCUc -5'
15993 3' -52.5 NC_004065.1 + 66480 0.66 0.995012
Target:  5'- cGCGGCuGUCGGAGACgcugcagacgaaccaGGCGAcGCuGGAa -3'
miRNA:   3'- -UGCUG-UAGCUUCUG---------------CCGCU-UGuCCUc -5'
15993 3' -52.5 NC_004065.1 + 161816 0.66 0.994713
Target:  5'- gGCG-CAUgGAcGGACGGaCGGGCGGGcGGa -3'
miRNA:   3'- -UGCuGUAgCU-UCUGCC-GCUUGUCC-UC- -5'
15993 3' -52.5 NC_004065.1 + 88908 0.66 0.994713
Target:  5'- gACGGCGaagcugaCGGAGACGaGCGAGCGGc-- -3'
miRNA:   3'- -UGCUGUa------GCUUCUGC-CGCUUGUCcuc -5'
15993 3' -52.5 NC_004065.1 + 185394 0.66 0.993904
Target:  5'- aGCGAUgaggCGAGuGAUGGUGGugGGGAu -3'
miRNA:   3'- -UGCUGua--GCUU-CUGCCGCUugUCCUc -5'
15993 3' -52.5 NC_004065.1 + 55723 0.66 0.993904
Target:  5'- uCGcACAggUUGcuGACGGUGAGCAGGGu -3'
miRNA:   3'- uGC-UGU--AGCuuCUGCCGCUUGUCCUc -5'
15993 3' -52.5 NC_004065.1 + 22863 0.66 0.993904
Target:  5'- gACGGUGUCGAAGGUGGCGGuaaauuCAGcGAGa -3'
miRNA:   3'- -UGCUGUAGCUUCUGCCGCUu-----GUC-CUC- -5'
15993 3' -52.5 NC_004065.1 + 70318 0.66 0.993904
Target:  5'- cCGugGUCGucguucuaucGGCGGCGAcgGCGGcGAGg -3'
miRNA:   3'- uGCugUAGCuu--------CUGCCGCU--UGUC-CUC- -5'
15993 3' -52.5 NC_004065.1 + 31370 0.66 0.993643
Target:  5'- cACGGCGUCGGAcGACacgcugcaccugguGGCGcGCAaccuGGAGg -3'
miRNA:   3'- -UGCUGUAGCUU-CUG--------------CCGCuUGU----CCUC- -5'
15993 3' -52.5 NC_004065.1 + 66634 0.66 0.993554
Target:  5'- gGCGACAUCGucggcuucggcgcGGugGGCGccCGGcGAGu -3'
miRNA:   3'- -UGCUGUAGCu------------UCugCCGCuuGUC-CUC- -5'
15993 3' -52.5 NC_004065.1 + 39295 0.66 0.992999
Target:  5'- gGCGAauggGGAGcCGGCGAACuguuGGGAGa -3'
miRNA:   3'- -UGCUguagCUUCuGCCGCUUG----UCCUC- -5'
15993 3' -52.5 NC_004065.1 + 179449 0.66 0.992999
Target:  5'- -aGACAguagggugcUCGAGGAUGG-GAGCGuGGGGg -3'
miRNA:   3'- ugCUGU---------AGCUUCUGCCgCUUGU-CCUC- -5'
15993 3' -52.5 NC_004065.1 + 32960 0.66 0.992999
Target:  5'- -gGGCGUCGAcGucGCGGCgGAGCAugacGGAGg -3'
miRNA:   3'- ugCUGUAGCUuC--UGCCG-CUUGU----CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.