miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15993 5' -63.9 NC_004065.1 + 59752 0.66 0.718853
Target:  5'- uGCCGaccGCGUGgccgaUGGUGGCggCGGCGg -3'
miRNA:   3'- gCGGC---UGCACa----GCCACCGggGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 120156 0.66 0.718853
Target:  5'- gCGgCGACGc--CGGUGGCaccgCCCGGCa- -3'
miRNA:   3'- -GCgGCUGCacaGCCACCG----GGGCCGca -5'
15993 5' -63.9 NC_004065.1 + 130070 0.66 0.718853
Target:  5'- aCGCCG-CGg--CGGUGGUCgacuaCGGCGa -3'
miRNA:   3'- -GCGGCuGCacaGCCACCGGg----GCCGCa -5'
15993 5' -63.9 NC_004065.1 + 93997 0.66 0.718853
Target:  5'- gGCCGGCuuuUCGG-GGUCCCGGUu- -3'
miRNA:   3'- gCGGCUGcacAGCCaCCGGGGCCGca -5'
15993 5' -63.9 NC_004065.1 + 222972 0.66 0.709752
Target:  5'- gGuuGACG-GUUGGggauucGGUcgCCCGGCGUg -3'
miRNA:   3'- gCggCUGCaCAGCCa-----CCG--GGGCCGCA- -5'
15993 5' -63.9 NC_004065.1 + 77405 0.66 0.709752
Target:  5'- aCGCUGGCGcacaUGgCGGUGaCCCgGGCGc -3'
miRNA:   3'- -GCGGCUGC----ACaGCCACcGGGgCCGCa -5'
15993 5' -63.9 NC_004065.1 + 141620 0.66 0.691392
Target:  5'- cCGCUGcCGg--CGGUGGCggCUCGGCGa -3'
miRNA:   3'- -GCGGCuGCacaGCCACCG--GGGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 118337 0.66 0.691392
Target:  5'- cCGCCGACGUccaUGGcgucGGCgUCGGCGUc -3'
miRNA:   3'- -GCGGCUGCAca-GCCa---CCGgGGCCGCA- -5'
15993 5' -63.9 NC_004065.1 + 119611 0.66 0.687698
Target:  5'- aCGCCGGCGg--CGGaggagacgccgucGGCCgUGGCGUg -3'
miRNA:   3'- -GCGGCUGCacaGCCa------------CCGGgGCCGCA- -5'
15993 5' -63.9 NC_004065.1 + 43862 0.66 0.682146
Target:  5'- aCGCCGugGaGuUCGGUGGCggccuCCaCGGCc- -3'
miRNA:   3'- -GCGGCugCaC-AGCCACCG-----GG-GCCGca -5'
15993 5' -63.9 NC_004065.1 + 63156 0.66 0.682146
Target:  5'- cCGUCGAacacaaGUGcCGcGaGGCCCUGGCGa -3'
miRNA:   3'- -GCGGCUg-----CACaGC-CaCCGGGGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 40907 0.66 0.682146
Target:  5'- gCGCCGGCuUGUCG--GGCCCUGaGCa- -3'
miRNA:   3'- -GCGGCUGcACAGCcaCCGGGGC-CGca -5'
15993 5' -63.9 NC_004065.1 + 84936 0.66 0.682146
Target:  5'- -aUCGugGUGuucUCGGUGGCggcgcacuucCCCGGCa- -3'
miRNA:   3'- gcGGCugCAC---AGCCACCG----------GGGCCGca -5'
15993 5' -63.9 NC_004065.1 + 1266 0.66 0.670076
Target:  5'- gGCCgGGCGUGUCGGUGuucgguugucgcauGCCCaaaGGaGUg -3'
miRNA:   3'- gCGG-CUGCACAGCCAC--------------CGGGg--CCgCA- -5'
15993 5' -63.9 NC_004065.1 + 196237 0.66 0.663559
Target:  5'- aCGUCcGCaUGUCGGgccgaaagcGGUCCCGGCGa -3'
miRNA:   3'- -GCGGcUGcACAGCCa--------CCGGGGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 140112 0.66 0.663559
Target:  5'- uCGCCaugGACGUG-CGGaGGUCCgGGCa- -3'
miRNA:   3'- -GCGG---CUGCACaGCCaCCGGGgCCGca -5'
15993 5' -63.9 NC_004065.1 + 139876 0.66 0.659829
Target:  5'- aGCCGGCGgcaggacggacgaGGUGGCCgcggggccuccggCCGGCGg -3'
miRNA:   3'- gCGGCUGCacag---------CCACCGG-------------GGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 93774 0.67 0.657963
Target:  5'- gCGgCGAgacaucuccCGUcGUCGGUGgaggagaccuucccaGCCCCGGCGa -3'
miRNA:   3'- -GCgGCU---------GCA-CAGCCAC---------------CGGGGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 203120 0.67 0.65423
Target:  5'- gGuCCGGCGUG-CGGUcgagcGGCCucuggaccggCCGGCGg -3'
miRNA:   3'- gC-GGCUGCACaGCCA-----CCGG----------GGCCGCa -5'
15993 5' -63.9 NC_004065.1 + 31659 0.67 0.635534
Target:  5'- aCGUCGGCGcUGUuccUGGcgaaGGaCCCCGGCGa -3'
miRNA:   3'- -GCGGCUGC-ACA---GCCa---CC-GGGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.