miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15998 3' -63.4 NC_004065.1 + 108850 0.66 0.712072
Target:  5'- uGCCGUGUauagugGCCUUCGa--GGCGCAUCGg -3'
miRNA:   3'- -CGGCACG------CGGGGGCggcUCGCGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 110033 0.66 0.712072
Target:  5'- cGCCGUGUucuuCCaCCCGCUcGGCGCGc-- -3'
miRNA:   3'- -CGGCACGc---GG-GGGCGGcUCGCGUagu -5'
15998 3' -63.4 NC_004065.1 + 133746 0.66 0.712072
Target:  5'- uCCGUGaCGCcccuggccgCCCCGCCGuccaucCGCAUCc -3'
miRNA:   3'- cGGCAC-GCG---------GGGGCGGCuc----GCGUAGu -5'
15998 3' -63.4 NC_004065.1 + 84688 0.66 0.712072
Target:  5'- aGCCGagaugagGCGCCCUgUGUCGAGUGUcgCu -3'
miRNA:   3'- -CGGCa------CGCGGGG-GCGGCUCGCGuaGu -5'
15998 3' -63.4 NC_004065.1 + 116713 0.66 0.712072
Target:  5'- uGUgGUGCGCCguCUCGCUGGGuCGCGg-- -3'
miRNA:   3'- -CGgCACGCGG--GGGCGGCUC-GCGUagu -5'
15998 3' -63.4 NC_004065.1 + 5235 0.66 0.712072
Target:  5'- aCCGUGCuGCCgCCCGCUcagguGGCGCuguugCAg -3'
miRNA:   3'- cGGCACG-CGG-GGGCGGc----UCGCGua---GU- -5'
15998 3' -63.4 NC_004065.1 + 18980 0.66 0.711148
Target:  5'- gGCUGUGCugcugcuGUCCCUGCUGucccGGCGCAa-- -3'
miRNA:   3'- -CGGCACG-------CGGGGGCGGC----UCGCGUagu -5'
15998 3' -63.4 NC_004065.1 + 229640 0.66 0.709298
Target:  5'- cUCGUGCGCCauCCCgGCCGGcggcaguggcagguGgGCGUCGg -3'
miRNA:   3'- cGGCACGCGG--GGG-CGGCU--------------CgCGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 121615 0.66 0.702806
Target:  5'- cCCGguaggGCaggauGCCCCCgaggauggcGuuGAGCGCGUCGu -3'
miRNA:   3'- cGGCa----CG-----CGGGGG---------CggCUCGCGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 87615 0.66 0.702806
Target:  5'- cGCCGgcagGCGaaagauggCCCGCgCGAGCGCGa-- -3'
miRNA:   3'- -CGGCa---CGCgg------GGGCG-GCUCGCGUagu -5'
15998 3' -63.4 NC_004065.1 + 66654 0.66 0.702806
Target:  5'- cGCgGUGgGCgCCCGgCGAGUGU-UCGa -3'
miRNA:   3'- -CGgCACgCGgGGGCgGCUCGCGuAGU- -5'
15998 3' -63.4 NC_004065.1 + 207539 0.66 0.693488
Target:  5'- cGCCGcGCGCUCCgCGUCGucGCGCc--- -3'
miRNA:   3'- -CGGCaCGCGGGG-GCGGCu-CGCGuagu -5'
15998 3' -63.4 NC_004065.1 + 109866 0.66 0.693488
Target:  5'- uGCCGggcgGUGCCaCCggcguCGCCGcGGCcGCGUCGg -3'
miRNA:   3'- -CGGCa---CGCGG-GG-----GCGGC-UCG-CGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 126287 0.66 0.693488
Target:  5'- cGCCGcGCGaaCCgaCGCCGAaggagGCGCGUCGu -3'
miRNA:   3'- -CGGCaCGCggGG--GCGGCU-----CGCGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 205177 0.66 0.693488
Target:  5'- cGCCGU-CGCCgCCaacaucgggCGCCGcGUGCGUCu -3'
miRNA:   3'- -CGGCAcGCGG-GG---------GCGGCuCGCGUAGu -5'
15998 3' -63.4 NC_004065.1 + 192173 0.66 0.692554
Target:  5'- cGCCGUcgcgaagugaaugGCGCCUuuGUaguagCGAGCGCG-CAg -3'
miRNA:   3'- -CGGCA-------------CGCGGGggCG-----GCUCGCGUaGU- -5'
15998 3' -63.4 NC_004065.1 + 66774 0.66 0.687876
Target:  5'- cGCCG-GCGCCgCCGCUgcgccgacgaaacauGAGCGgaCGUCc -3'
miRNA:   3'- -CGGCaCGCGGgGGCGG---------------CUCGC--GUAGu -5'
15998 3' -63.4 NC_004065.1 + 194536 0.66 0.687876
Target:  5'- cGCCGgucGUGCCCgugaaCGUCGucacgggcaccgcgcAGCGCGUCGa -3'
miRNA:   3'- -CGGCa--CGCGGGg----GCGGC---------------UCGCGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 42062 0.66 0.684126
Target:  5'- uGCUG-GCGCugguguggcugaCCUCGCUGAuguGCGCGUCGc -3'
miRNA:   3'- -CGGCaCGCG------------GGGGCGGCU---CGCGUAGU- -5'
15998 3' -63.4 NC_004065.1 + 28830 0.66 0.684126
Target:  5'- cGCCGcGcCGCCCgaGCCGGGaCGCGc-- -3'
miRNA:   3'- -CGGCaC-GCGGGggCGGCUC-GCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.