miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15998 5' -56.3 NC_004065.1 + 99649 0.66 0.95618
Target:  5'- gCCAGuagauggagaAGCcggCGGCGcgGcGCcGACAGCg -3'
miRNA:   3'- aGGUC----------UCGua-GCCGCuaC-CG-CUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 26443 0.66 0.95618
Target:  5'- gUCCGGAcugcgguacGCAUacaCGuuGGUGGuCGACGGCa -3'
miRNA:   3'- -AGGUCU---------CGUA---GCcgCUACC-GCUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 160603 0.66 0.95618
Target:  5'- gUCCAGcAG-GUCGGCGcgcaccUGGCGccccgucgGCAGCu -3'
miRNA:   3'- -AGGUC-UCgUAGCCGCu-----ACCGC--------UGUCG- -5'
15998 5' -56.3 NC_004065.1 + 130579 0.66 0.95618
Target:  5'- cUCCGG-GCAUCuGGcCGAaGGaCGuCGGCa -3'
miRNA:   3'- -AGGUCuCGUAG-CC-GCUaCC-GCuGUCG- -5'
15998 5' -56.3 NC_004065.1 + 74844 0.66 0.95618
Target:  5'- aCCgaGGGGCGcagguugaggCGGCGGUGGUaGACGGg -3'
miRNA:   3'- aGG--UCUCGUa---------GCCGCUACCG-CUGUCg -5'
15998 5' -56.3 NC_004065.1 + 90797 0.66 0.95618
Target:  5'- gUCCAGcAG-AUCGGCGugggucUGGCGuucuugacgaGCGGCc -3'
miRNA:   3'- -AGGUC-UCgUAGCCGCu-----ACCGC----------UGUCG- -5'
15998 5' -56.3 NC_004065.1 + 113738 0.66 0.95618
Target:  5'- cUCGGAGaacucCGGCGAggaGGCcgaggGACAGCg -3'
miRNA:   3'- aGGUCUCgua--GCCGCUa--CCG-----CUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 183264 0.66 0.95618
Target:  5'- gUUCGGGGUGUCGGgGGaccUGGaggaGAgCAGCg -3'
miRNA:   3'- -AGGUCUCGUAGCCgCU---ACCg---CU-GUCG- -5'
15998 5' -56.3 NC_004065.1 + 99865 0.66 0.952368
Target:  5'- gCCGGGGUcgCGGaua--GCGACGGCc -3'
miRNA:   3'- aGGUCUCGuaGCCgcuacCGCUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 109125 0.66 0.952368
Target:  5'- -aCGGAGg--UGGCGGggacggcgGGUGACGGCg -3'
miRNA:   3'- agGUCUCguaGCCGCUa-------CCGCUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 31875 0.66 0.952368
Target:  5'- cUCAG-GCAUUcGCcacccAUGGCGGCGGCg -3'
miRNA:   3'- aGGUCuCGUAGcCGc----UACCGCUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 199453 0.66 0.952368
Target:  5'- cCCAGcugggacgcgaAGUcgCGGaCGAU-GCGGCAGCc -3'
miRNA:   3'- aGGUC-----------UCGuaGCC-GCUAcCGCUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 141649 0.66 0.952368
Target:  5'- --gAGGGCggUGGCGGUGccGCGGCcGCg -3'
miRNA:   3'- aggUCUCGuaGCCGCUAC--CGCUGuCG- -5'
15998 5' -56.3 NC_004065.1 + 187924 0.66 0.952368
Target:  5'- -aCGGucacguaCGUCGGCGccGGCGACGcGCa -3'
miRNA:   3'- agGUCuc-----GUAGCCGCuaCCGCUGU-CG- -5'
15998 5' -56.3 NC_004065.1 + 76721 0.66 0.952368
Target:  5'- gUCgAGGuuGCAcuccUCGGCGGggacgGGCG-CGGCg -3'
miRNA:   3'- -AGgUCU--CGU----AGCCGCUa----CCGCuGUCG- -5'
15998 5' -56.3 NC_004065.1 + 116929 0.66 0.952368
Target:  5'- gUUCAGuuCuUCGGCGGUGGUcugGugGGCc -3'
miRNA:   3'- -AGGUCucGuAGCCGCUACCG---CugUCG- -5'
15998 5' -56.3 NC_004065.1 + 44517 0.66 0.952368
Target:  5'- gUCCGGcGGCGcgauguuacCGGgGAcGGUGGCGGCg -3'
miRNA:   3'- -AGGUC-UCGUa--------GCCgCUaCCGCUGUCG- -5'
15998 5' -56.3 NC_004065.1 + 78511 0.66 0.951975
Target:  5'- gUCCAGGGCG-CGG--AUGGCGAugucggagacgacCGGCc -3'
miRNA:   3'- -AGGUCUCGUaGCCgcUACCGCU-------------GUCG- -5'
15998 5' -56.3 NC_004065.1 + 75834 0.66 0.94834
Target:  5'- uUUCAGGauGCGagaGGCGAcGGCGAgcCAGCa -3'
miRNA:   3'- -AGGUCU--CGUag-CCGCUaCCGCU--GUCG- -5'
15998 5' -56.3 NC_004065.1 + 65431 0.66 0.94834
Target:  5'- gCCugcGAGCggCGGCcGUGGUGGCucuggAGCg -3'
miRNA:   3'- aGGu--CUCGuaGCCGcUACCGCUG-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.