miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
160 3' -53 AC_000007.1 + 10336 0.66 0.692712
Target:  5'- cGGCGGCGGcugGCGGuAGAGGGgccagcguAGGg -3'
miRNA:   3'- uCUGUCGCUa--CGCCuUCUCUCac------UCC- -5'
160 3' -53 AC_000007.1 + 13967 0.67 0.666482
Target:  5'- cGGCAGCGAcaGCagcguccuggauuuGGGAGGGAGUGGc- -3'
miRNA:   3'- uCUGUCGCUa-CG--------------CCUUCUCUCACUcc -5'
160 3' -53 AC_000007.1 + 31020 0.69 0.544208
Target:  5'- aAGAUAGUgGGUGCGGAGGgacaAGAacaUGAGGa -3'
miRNA:   3'- -UCUGUCG-CUACGCCUUC----UCUc--ACUCC- -5'
160 3' -53 AC_000007.1 + 954 0.71 0.407377
Target:  5'- uGACGaCGAgGauGAAGAGGGUGAGGa -3'
miRNA:   3'- uCUGUcGCUaCgcCUUCUCUCACUCC- -5'
160 3' -53 AC_000007.1 + 15074 0.72 0.388273
Target:  5'- uGGCAGCGgcGCGGAAGAGAa----- -3'
miRNA:   3'- uCUGUCGCuaCGCCUUCUCUcacucc -5'
160 3' -53 AC_000007.1 + 9389 0.74 0.286561
Target:  5'- uGGCGGCGGUGgGGGAGGGGG-GAc- -3'
miRNA:   3'- uCUGUCGCUACgCCUUCUCUCaCUcc -5'
160 3' -53 AC_000007.1 + 6090 1.11 0.00069
Target:  5'- cAGACAGCGAUGCGGAAGAGAGUGAGGa -3'
miRNA:   3'- -UCUGUCGCUACGCCUUCUCUCACUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.