miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1600 3' -52.9 NC_001347.2 + 158098 0.66 0.992796
Target:  5'- gCGCUGcgCGgcGGCCUcaucggcaGCGUCAucGACc -3'
miRNA:   3'- aGCGACaaGCuaCUGGA--------CGCAGU--CUG- -5'
1600 3' -52.9 NC_001347.2 + 164896 0.66 0.992496
Target:  5'- aUCGCUGagggggaggaggaggCGGUGGCCaGUGUUuuGGACg -3'
miRNA:   3'- -AGCGACaa-------------GCUACUGGaCGCAG--UCUG- -5'
1600 3' -52.9 NC_001347.2 + 92112 0.66 0.991757
Target:  5'- cUCGUUGUg-GAUGAgcgaCUGCGUCauGGGCc -3'
miRNA:   3'- -AGCGACAagCUACUg---GACGCAG--UCUG- -5'
1600 3' -52.9 NC_001347.2 + 194573 0.66 0.989325
Target:  5'- gCGCUucUCGu--GCCUGCGcCAGGCu -3'
miRNA:   3'- aGCGAcaAGCuacUGGACGCaGUCUG- -5'
1600 3' -52.9 NC_001347.2 + 169213 0.66 0.989325
Target:  5'- cUCGCUGggcaucaccUCGuUGcucACCUGCGUCAuGCg -3'
miRNA:   3'- -AGCGACa--------AGCuAC---UGGACGCAGUcUG- -5'
1600 3' -52.9 NC_001347.2 + 155246 0.66 0.989325
Target:  5'- cCGCUGUaacgCGAaacGGCCUGuCGUugCGGACu -3'
miRNA:   3'- aGCGACAa---GCUa--CUGGAC-GCA--GUCUG- -5'
1600 3' -52.9 NC_001347.2 + 1859 0.66 0.987915
Target:  5'- gUCGCUGc-UGAcGGCCgUGCGUCGGcACc -3'
miRNA:   3'- -AGCGACaaGCUaCUGG-ACGCAGUC-UG- -5'
1600 3' -52.9 NC_001347.2 + 178024 0.67 0.986366
Target:  5'- cUGCUGgaCGA-GGCCgagugGCGaCAGACg -3'
miRNA:   3'- aGCGACaaGCUaCUGGa----CGCaGUCUG- -5'
1600 3' -52.9 NC_001347.2 + 171315 0.67 0.984669
Target:  5'- cUCGCUGUUUGGgcGGCCUgucucccgGCGgcucUCGGACc -3'
miRNA:   3'- -AGCGACAAGCUa-CUGGA--------CGC----AGUCUG- -5'
1600 3' -52.9 NC_001347.2 + 26560 0.68 0.973684
Target:  5'- aCGUUGUUCG-UGGCCUGCaaCGG-Cg -3'
miRNA:   3'- aGCGACAAGCuACUGGACGcaGUCuG- -5'
1600 3' -52.9 NC_001347.2 + 62261 0.7 0.936555
Target:  5'- cCGCUGUUCGAggaccggcugcUGGCCUacgGCGUgCuGGCu -3'
miRNA:   3'- aGCGACAAGCU-----------ACUGGA---CGCA-GuCUG- -5'
1600 3' -52.9 NC_001347.2 + 117855 0.77 0.60793
Target:  5'- cCGCUGacgCGgcGACC-GCGUCAGACg -3'
miRNA:   3'- aGCGACaa-GCuaCUGGaCGCAGUCUG- -5'
1600 3' -52.9 NC_001347.2 + 164199 1.11 0.006208
Target:  5'- gUCGCUGUUCGAUGACCUGCGUCAGACg -3'
miRNA:   3'- -AGCGACAAGCUACUGGACGCAGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.