miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1600 5' -56.3 NC_001347.2 + 113210 0.66 0.953713
Target:  5'- aCUGCGGcuGUCGCccgaacgcucGGCGGACGccGCUu -3'
miRNA:   3'- -GAUGCC--CAGCGu---------CCGUCUGCuuCGAc -5'
1600 5' -56.3 NC_001347.2 + 144450 0.66 0.953713
Target:  5'- -cACGGGggGCGacGGCcccgaGGGCGAGGCUa -3'
miRNA:   3'- gaUGCCCagCGU--CCG-----UCUGCUUCGAc -5'
1600 5' -56.3 NC_001347.2 + 100735 0.66 0.950155
Target:  5'- -aACGGGUCGCGGacgacaaaaGCGGGCGuccucgcccgucgauAGCUc -3'
miRNA:   3'- gaUGCCCAGCGUC---------CGUCUGCu--------------UCGAc -5'
1600 5' -56.3 NC_001347.2 + 140109 0.66 0.949748
Target:  5'- -aACGGGUUGUcGGCGGccuGCGAAGaCg- -3'
miRNA:   3'- gaUGCCCAGCGuCCGUC---UGCUUC-Gac -5'
1600 5' -56.3 NC_001347.2 + 14261 0.67 0.921275
Target:  5'- gCUGCGGGUU-CuGGCccuGACGgcGCUGc -3'
miRNA:   3'- -GAUGCCCAGcGuCCGu--CUGCuuCGAC- -5'
1600 5' -56.3 NC_001347.2 + 221196 0.67 0.915738
Target:  5'- gUACGGuccUCGCAGGUGGcACGGuAGUUGg -3'
miRNA:   3'- gAUGCCc--AGCGUCCGUC-UGCU-UCGAC- -5'
1600 5' -56.3 NC_001347.2 + 50525 0.67 0.915172
Target:  5'- gCUACGuuUC-CGGGCAGACaucuuauGAAGCUGa -3'
miRNA:   3'- -GAUGCccAGcGUCCGUCUG-------CUUCGAC- -5'
1600 5' -56.3 NC_001347.2 + 186883 0.68 0.897779
Target:  5'- uUGCGGGUC-UGGGCGGAacagcacaCGggGCg- -3'
miRNA:   3'- gAUGCCCAGcGUCCGUCU--------GCuuCGac -5'
1600 5' -56.3 NC_001347.2 + 1152 0.68 0.897779
Target:  5'- --cCGGuGgagCGcCAGGCGcuGACGGAGCUGg -3'
miRNA:   3'- gauGCC-Ca--GC-GUCCGU--CUGCUUCGAC- -5'
1600 5' -56.3 NC_001347.2 + 2306 0.68 0.89135
Target:  5'- -gACGGGcacguguaccCGCuGGCGG-CGGAGCUGu -3'
miRNA:   3'- gaUGCCCa---------GCGuCCGUCuGCUUCGAC- -5'
1600 5' -56.3 NC_001347.2 + 191259 0.68 0.884705
Target:  5'- -cACGGcGUaaUGCGGGCAGGCGugcGGCa- -3'
miRNA:   3'- gaUGCC-CA--GCGUCCGUCUGCu--UCGac -5'
1600 5' -56.3 NC_001347.2 + 99544 0.68 0.884705
Target:  5'- --cCGGGUCGCGcGGCAG-UGAcAGCUu -3'
miRNA:   3'- gauGCCCAGCGU-CCGUCuGCU-UCGAc -5'
1600 5' -56.3 NC_001347.2 + 182291 0.68 0.870066
Target:  5'- aUGCGGcGUCGUugccgGGGCGGcugcuccagguccGCGGAGCUa -3'
miRNA:   3'- gAUGCC-CAGCG-----UCCGUC-------------UGCUUCGAc -5'
1600 5' -56.3 NC_001347.2 + 7096 0.69 0.848391
Target:  5'- gUGCGGGUCGCGGG-AGGCacuucGGCg- -3'
miRNA:   3'- gAUGCCCAGCGUCCgUCUGcu---UCGac -5'
1600 5' -56.3 NC_001347.2 + 82712 0.69 0.840546
Target:  5'- gUACGGGU-GguGGCGGugGugcagcggcGGCUGa -3'
miRNA:   3'- gAUGCCCAgCguCCGUCugCu--------UCGAC- -5'
1600 5' -56.3 NC_001347.2 + 182205 0.69 0.833332
Target:  5'- gUGCGGGUgGCGGGCugcgucgccuucgguGACGucggugguGGCUGu -3'
miRNA:   3'- gAUGCCCAgCGUCCGu--------------CUGCu-------UCGAC- -5'
1600 5' -56.3 NC_001347.2 + 228240 0.69 0.824324
Target:  5'- gUGCGGGUCGUuucGGCG--UGAAGUUGg -3'
miRNA:   3'- gAUGCCCAGCGu--CCGUcuGCUUCGAC- -5'
1600 5' -56.3 NC_001347.2 + 44058 0.69 0.815961
Target:  5'- gCUGgGGGUgGC-GGCAGugGuacuGCUGa -3'
miRNA:   3'- -GAUgCCCAgCGuCCGUCugCuu--CGAC- -5'
1600 5' -56.3 NC_001347.2 + 136139 0.69 0.815961
Target:  5'- -gGCGGGagGCAGGCGGgaGCGGGcGCa- -3'
miRNA:   3'- gaUGCCCagCGUCCGUC--UGCUU-CGac -5'
1600 5' -56.3 NC_001347.2 + 166064 0.7 0.789951
Target:  5'- aUGCGGaGUCGC-GGCGGuuGggGCg- -3'
miRNA:   3'- gAUGCC-CAGCGuCCGUCugCuuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.