Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16002 | 3' | -55.7 | NC_004065.1 | + | 80094 | 0.71 | 0.784262 |
Target: 5'- aGGAGAGGGUgaGUUCG-GGCAcGGGCAc -3' miRNA: 3'- gCCUCUCCUAg-CAGGCuCUGU-CCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 138256 | 0.72 | 0.738404 |
Target: 5'- uCGaGGAGGGUCGggugUCCGAGGC-GGACGu -3' miRNA: 3'- -GCcUCUCCUAGC----AGGCUCUGuCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 26421 | 0.73 | 0.680618 |
Target: 5'- aCGGgacAGAGGAcUCGUCCGAGuCcGGACu -3' miRNA: 3'- -GCC---UCUCCU-AGCAGGCUCuGuCCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 44769 | 0.75 | 0.611609 |
Target: 5'- cCGGGccAGGGUCGUCCGAGGCcuGGGCc -3' miRNA: 3'- -GCCUc-UCCUAGCAGGCUCUGu-CCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 53516 | 1.08 | 0.00621 |
Target: 5'- uCGGAGAGGAUCGUCCGAGACAGGACAc -3' miRNA: 3'- -GCCUCUCCUAGCAGGCUCUGUCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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