Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16002 | 3' | -55.7 | NC_004065.1 | + | 53516 | 1.08 | 0.00621 |
Target: 5'- uCGGAGAGGAUCGUCCGAGACAGGACAc -3' miRNA: 3'- -GCCUCUCCUAGCAGGCUCUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 44769 | 0.75 | 0.611609 |
Target: 5'- cCGGGccAGGGUCGUCCGAGGCcuGGGCc -3' miRNA: 3'- -GCCUc-UCCUAGCAGGCUCUGu-CCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 26421 | 0.73 | 0.680618 |
Target: 5'- aCGGgacAGAGGAcUCGUCCGAGuCcGGACu -3' miRNA: 3'- -GCC---UCUCCU-AGCAGGCUCuGuCCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 138256 | 0.72 | 0.738404 |
Target: 5'- uCGaGGAGGGUCGggugUCCGAGGC-GGACGu -3' miRNA: 3'- -GCcUCUCCUAGC----AGGCUCUGuCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 120727 | 0.71 | 0.80177 |
Target: 5'- aGGAGAuggggGGAUCGUUCGGcguGACccAGGACAc -3' miRNA: 3'- gCCUCU-----CCUAGCAGGCU---CUG--UCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 142933 | 0.71 | 0.818706 |
Target: 5'- uCGGAGGcGAUCGUCCGccacGugGGGAUu -3' miRNA: 3'- -GCCUCUcCUAGCAGGCu---CugUCCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 101335 | 0.71 | 0.818706 |
Target: 5'- aGGAGGGGGaCGUggGGGACAGGAa- -3' miRNA: 3'- gCCUCUCCUaGCAggCUCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 80094 | 0.71 | 0.784262 |
Target: 5'- aGGAGAGGGUgaGUUCG-GGCAcGGGCAc -3' miRNA: 3'- gCCUCUCCUAg-CAGGCuCUGU-CCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 176463 | 0.7 | 0.865507 |
Target: 5'- uCGGGGAGGGaUGUCgggcaGAGGCGGaGGCAc -3' miRNA: 3'- -GCCUCUCCUaGCAGg----CUCUGUC-CUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 136234 | 0.7 | 0.850628 |
Target: 5'- gGGAGAGGAg---CCG-GACAGGAa- -3' miRNA: 3'- gCCUCUCCUagcaGGCuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 139860 | 0.69 | 0.872656 |
Target: 5'- aCGGcGGAGGcggCGgagCCGGcGGCAGGACGg -3' miRNA: 3'- -GCC-UCUCCua-GCa--GGCU-CUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 81817 | 0.69 | 0.882325 |
Target: 5'- uCGGAGGGGAagguguagauuugaCGUCgGGGAuCGGGGCGc -3' miRNA: 3'- -GCCUCUCCUa-------------GCAGgCUCU-GUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 71565 | 0.69 | 0.892879 |
Target: 5'- gGGAGAGGcgCGUgaugaCGGcACGGGGCAu -3' miRNA: 3'- gCCUCUCCuaGCAg----GCUcUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 115394 | 0.69 | 0.892879 |
Target: 5'- aGGAGGGauGAUCGUCCccGGCGGGGu- -3' miRNA: 3'- gCCUCUC--CUAGCAGGcuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 73938 | 0.69 | 0.899199 |
Target: 5'- gCGaGAGuGGAUCuGgcagCCGAGACAGG-CGu -3' miRNA: 3'- -GC-CUCuCCUAG-Ca---GGCUCUGUCCuGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 96671 | 0.68 | 0.905302 |
Target: 5'- gCGGgcucgcccgacGGAGGAUCGUgCGGgcGAgGGGACGa -3' miRNA: 3'- -GCC-----------UCUCCUAGCAgGCU--CUgUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 122609 | 0.68 | 0.916853 |
Target: 5'- aGGGcagcacGAGGucccaGUCCGAGACGGaGACGa -3' miRNA: 3'- gCCU------CUCCuag--CAGGCUCUGUC-CUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 80588 | 0.68 | 0.911188 |
Target: 5'- uCGGGGGGGA--GUCCGAGgACGGuACGg -3' miRNA: 3'- -GCCUCUCCUagCAGGCUC-UGUCcUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 192530 | 0.68 | 0.932515 |
Target: 5'- -cGAGAuGGAgUCGUCgGAGACgaAGGACu -3' miRNA: 3'- gcCUCU-CCU-AGCAGgCUCUG--UCCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 19293 | 0.68 | 0.932515 |
Target: 5'- gGGGGAucuGGAcCGUCCGGcGACGGG-CGu -3' miRNA: 3'- gCCUCU---CCUaGCAGGCU-CUGUCCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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