miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 3' -55.7 NC_004065.1 + 227890 0.67 0.950293
Target:  5'- gCGGAcGAGGAUCGcUCCGAGgAUAGc--- -3'
miRNA:   3'- -GCCU-CUCCUAGC-AGGCUC-UGUCcugu -5'
16002 3' -55.7 NC_004065.1 + 89045 0.67 0.941844
Target:  5'- uGGAGAcgaacuugGGcgCGUCCuugagGAGACAGGGgAa -3'
miRNA:   3'- gCCUCU--------CCuaGCAGG-----CUCUGUCCUgU- -5'
16002 3' -55.7 NC_004065.1 + 192530 0.68 0.932515
Target:  5'- -cGAGAuGGAgUCGUCgGAGACgaAGGACu -3'
miRNA:   3'- gcCUCU-CCU-AGCAGgCUCUG--UCCUGu -5'
16002 3' -55.7 NC_004065.1 + 19293 0.68 0.932515
Target:  5'- gGGGGAucuGGAcCGUCCGGcGACGGG-CGu -3'
miRNA:   3'- gCCUCU---CCUaGCAGGCU-CUGUCCuGU- -5'
16002 3' -55.7 NC_004065.1 + 181206 0.68 0.924412
Target:  5'- gGuGAGAGGAUgGUgCCGuucggccggcugcguGGACGGGACc -3'
miRNA:   3'- gC-CUCUCCUAgCA-GGC---------------UCUGUCCUGu -5'
16002 3' -55.7 NC_004065.1 + 143290 0.68 0.916853
Target:  5'- aGGGccGAGGcggcGUCGggggCCGGGGCAGGAgGg -3'
miRNA:   3'- gCCU--CUCC----UAGCa---GGCUCUGUCCUgU- -5'
16002 3' -55.7 NC_004065.1 + 148384 0.68 0.916853
Target:  5'- gCGGAGGGGGggccgaauguUCGUcuucagccCCGAGA-AGGGCAa -3'
miRNA:   3'- -GCCUCUCCU----------AGCA--------GGCUCUgUCCUGU- -5'
16002 3' -55.7 NC_004065.1 + 122609 0.68 0.916853
Target:  5'- aGGGcagcacGAGGucccaGUCCGAGACGGaGACGa -3'
miRNA:   3'- gCCU------CUCCuag--CAGGCUCUGUC-CUGU- -5'
16002 3' -55.7 NC_004065.1 + 80588 0.68 0.911188
Target:  5'- uCGGGGGGGA--GUCCGAGgACGGuACGg -3'
miRNA:   3'- -GCCUCUCCUagCAGGCUC-UGUCcUGU- -5'
16002 3' -55.7 NC_004065.1 + 96671 0.68 0.905302
Target:  5'- gCGGgcucgcccgacGGAGGAUCGUgCGGgcGAgGGGACGa -3'
miRNA:   3'- -GCC-----------UCUCCUAGCAgGCU--CUgUCCUGU- -5'
16002 3' -55.7 NC_004065.1 + 73938 0.69 0.899199
Target:  5'- gCGaGAGuGGAUCuGgcagCCGAGACAGG-CGu -3'
miRNA:   3'- -GC-CUCuCCUAG-Ca---GGCUCUGUCCuGU- -5'
16002 3' -55.7 NC_004065.1 + 115394 0.69 0.892879
Target:  5'- aGGAGGGauGAUCGUCCccGGCGGGGu- -3'
miRNA:   3'- gCCUCUC--CUAGCAGGcuCUGUCCUgu -5'
16002 3' -55.7 NC_004065.1 + 71565 0.69 0.892879
Target:  5'- gGGAGAGGcgCGUgaugaCGGcACGGGGCAu -3'
miRNA:   3'- gCCUCUCCuaGCAg----GCUcUGUCCUGU- -5'
16002 3' -55.7 NC_004065.1 + 81817 0.69 0.882325
Target:  5'- uCGGAGGGGAagguguagauuugaCGUCgGGGAuCGGGGCGc -3'
miRNA:   3'- -GCCUCUCCUa-------------GCAGgCUCU-GUCCUGU- -5'
16002 3' -55.7 NC_004065.1 + 139860 0.69 0.872656
Target:  5'- aCGGcGGAGGcggCGgagCCGGcGGCAGGACGg -3'
miRNA:   3'- -GCC-UCUCCua-GCa--GGCU-CUGUCCUGU- -5'
16002 3' -55.7 NC_004065.1 + 176463 0.7 0.865507
Target:  5'- uCGGGGAGGGaUGUCgggcaGAGGCGGaGGCAc -3'
miRNA:   3'- -GCCUCUCCUaGCAGg----CUCUGUC-CUGU- -5'
16002 3' -55.7 NC_004065.1 + 136234 0.7 0.850628
Target:  5'- gGGAGAGGAg---CCG-GACAGGAa- -3'
miRNA:   3'- gCCUCUCCUagcaGGCuCUGUCCUgu -5'
16002 3' -55.7 NC_004065.1 + 142933 0.71 0.818706
Target:  5'- uCGGAGGcGAUCGUCCGccacGugGGGAUu -3'
miRNA:   3'- -GCCUCUcCUAGCAGGCu---CugUCCUGu -5'
16002 3' -55.7 NC_004065.1 + 101335 0.71 0.818706
Target:  5'- aGGAGGGGGaCGUggGGGACAGGAa- -3'
miRNA:   3'- gCCUCUCCUaGCAggCUCUGUCCUgu -5'
16002 3' -55.7 NC_004065.1 + 120727 0.71 0.80177
Target:  5'- aGGAGAuggggGGAUCGUUCGGcguGACccAGGACAc -3'
miRNA:   3'- gCCUCU-----CCUAGCAGGCU---CUG--UCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.