Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16002 | 3' | -55.7 | NC_004065.1 | + | 19293 | 0.68 | 0.932515 |
Target: 5'- gGGGGAucuGGAcCGUCCGGcGACGGG-CGu -3' miRNA: 3'- gCCUCU---CCUaGCAGGCU-CUGUCCuGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 19709 | 0.66 | 0.967711 |
Target: 5'- aCGcGGAGGcgUGcggccaUCCGAGAUGGGGCGc -3' miRNA: 3'- -GCcUCUCCuaGC------AGGCUCUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 26421 | 0.73 | 0.680618 |
Target: 5'- aCGGgacAGAGGAcUCGUCCGAGuCcGGACu -3' miRNA: 3'- -GCC---UCUCCU-AGCAGGCUCuGuCCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 43275 | 0.66 | 0.973284 |
Target: 5'- aGGGGGGGAU-GUCCGGcGugGcGACGa -3' miRNA: 3'- gCCUCUCCUAgCAGGCU-CugUcCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 44769 | 0.75 | 0.611609 |
Target: 5'- cCGGGccAGGGUCGUCCGAGGCcuGGGCc -3' miRNA: 3'- -GCCUc-UCCUAGCAGGCUCUGu-CCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 53516 | 1.08 | 0.00621 |
Target: 5'- uCGGAGAGGAUCGUCCGAGACAGGACAc -3' miRNA: 3'- -GCCUCUCCUAGCAGGCUCUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 59793 | 0.67 | 0.954193 |
Target: 5'- aCGGGccGGuucUCG-CCGAGACAGGAgAg -3' miRNA: 3'- -GCCUcuCCu--AGCaGGCUCUGUCCUgU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 71565 | 0.69 | 0.892879 |
Target: 5'- gGGAGAGGcgCGUgaugaCGGcACGGGGCAu -3' miRNA: 3'- gCCUCUCCuaGCAg----GCUcUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 73938 | 0.69 | 0.899199 |
Target: 5'- gCGaGAGuGGAUCuGgcagCCGAGACAGG-CGu -3' miRNA: 3'- -GC-CUCuCCUAG-Ca---GGCUCUGUCCuGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 78212 | 0.66 | 0.970592 |
Target: 5'- uCGGAGAGGAccgggUCG-CUGAugagcgcgGAgAGGACGu -3' miRNA: 3'- -GCCUCUCCU-----AGCaGGCU--------CUgUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 80094 | 0.71 | 0.784262 |
Target: 5'- aGGAGAGGGUgaGUUCG-GGCAcGGGCAc -3' miRNA: 3'- gCCUCUCCUAg-CAGGCuCUGU-CCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 80588 | 0.68 | 0.911188 |
Target: 5'- uCGGGGGGGA--GUCCGAGgACGGuACGg -3' miRNA: 3'- -GCCUCUCCUagCAGGCUC-UGUCcUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 81817 | 0.69 | 0.882325 |
Target: 5'- uCGGAGGGGAagguguagauuugaCGUCgGGGAuCGGGGCGc -3' miRNA: 3'- -GCCUCUCCUa-------------GCAGgCUCU-GUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 89045 | 0.67 | 0.941844 |
Target: 5'- uGGAGAcgaacuugGGcgCGUCCuugagGAGACAGGGgAa -3' miRNA: 3'- gCCUCU--------CCuaGCAGG-----CUCUGUCCUgU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 89798 | 0.67 | 0.954193 |
Target: 5'- uGGAGAacAUgGUCCGGuaauacggaacGACAGGACGg -3' miRNA: 3'- gCCUCUccUAgCAGGCU-----------CUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 96671 | 0.68 | 0.905302 |
Target: 5'- gCGGgcucgcccgacGGAGGAUCGUgCGGgcGAgGGGACGa -3' miRNA: 3'- -GCC-----------UCUCCUAGCAgGCU--CUgUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 98227 | 0.66 | 0.964636 |
Target: 5'- aGGAcucGAGGAUCGagggugCCGAcGACggcucGGGACGg -3' miRNA: 3'- gCCU---CUCCUAGCa-----GGCU-CUG-----UCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 101335 | 0.71 | 0.818706 |
Target: 5'- aGGAGGGGGaCGUggGGGACAGGAa- -3' miRNA: 3'- gCCUCUCCUaGCAggCUCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 115394 | 0.69 | 0.892879 |
Target: 5'- aGGAGGGauGAUCGUCCccGGCGGGGu- -3' miRNA: 3'- gCCUCUC--CUAGCAGGcuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 120727 | 0.71 | 0.80177 |
Target: 5'- aGGAGAuggggGGAUCGUUCGGcguGACccAGGACAc -3' miRNA: 3'- gCCUCU-----CCUAGCAGGCU---CUG--UCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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