Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16002 | 3' | -55.7 | NC_004065.1 | + | 122609 | 0.68 | 0.916853 |
Target: 5'- aGGGcagcacGAGGucccaGUCCGAGACGGaGACGa -3' miRNA: 3'- gCCU------CUCCuag--CAGGCUCUGUC-CUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 127474 | 0.66 | 0.967711 |
Target: 5'- cCGGGGAGGugGUCGggCGcGGCGGGAg- -3' miRNA: 3'- -GCCUCUCC--UAGCagGCuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 129328 | 0.66 | 0.973284 |
Target: 5'- aGGAccaGGGGGUCauccgaUCCGAG-CGGGAUAa -3' miRNA: 3'- gCCU---CUCCUAGc-----AGGCUCuGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 129986 | 0.66 | 0.973284 |
Target: 5'- aGGcucugcGGAGGAUacCGccCCGAGGCAGcGACGa -3' miRNA: 3'- gCC------UCUCCUA--GCa-GGCUCUGUC-CUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 136135 | 0.66 | 0.961361 |
Target: 5'- uCGGGGAGGGaaG-CCG-GACAGGGa- -3' miRNA: 3'- -GCCUCUCCUagCaGGCuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 136167 | 0.66 | 0.961361 |
Target: 5'- uCGGGGAGGGaaG-CCG-GACAGGGa- -3' miRNA: 3'- -GCCUCUCCUagCaGGCuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 136199 | 0.66 | 0.961361 |
Target: 5'- uCGGGGAGGGaaG-CCG-GACAGGGa- -3' miRNA: 3'- -GCCUCUCCUagCaGGCuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 136234 | 0.7 | 0.850628 |
Target: 5'- gGGAGAGGAg---CCG-GACAGGAa- -3' miRNA: 3'- gCCUCUCCUagcaGGCuCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 136826 | 0.66 | 0.973284 |
Target: 5'- gGGAGGGGGggGUuuGGGGgGGGGu- -3' miRNA: 3'- gCCUCUCCUagCAggCUCUgUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 138256 | 0.72 | 0.738404 |
Target: 5'- uCGaGGAGGGUCGggugUCCGAGGC-GGACGu -3' miRNA: 3'- -GCcUCUCCUAGC----AGGCUCUGuCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 139481 | 0.66 | 0.973284 |
Target: 5'- -cGAGGGGGcCGUC--GGGCGGGACGa -3' miRNA: 3'- gcCUCUCCUaGCAGgcUCUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 139860 | 0.69 | 0.872656 |
Target: 5'- aCGGcGGAGGcggCGgagCCGGcGGCAGGACGg -3' miRNA: 3'- -GCC-UCUCCua-GCa--GGCU-CUGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 142933 | 0.71 | 0.818706 |
Target: 5'- uCGGAGGcGAUCGUCCGccacGugGGGAUu -3' miRNA: 3'- -GCCUCUcCUAGCAGGCu---CugUCCUGu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 143290 | 0.68 | 0.916853 |
Target: 5'- aGGGccGAGGcggcGUCGggggCCGGGGCAGGAgGg -3' miRNA: 3'- gCCU--CUCC----UAGCa---GGCUCUGUCCUgU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 145719 | 0.66 | 0.961361 |
Target: 5'- aGGAGAGG-UCGguggagGAGGCGGGAg- -3' miRNA: 3'- gCCUCUCCuAGCagg---CUCUGUCCUgu -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 148384 | 0.68 | 0.916853 |
Target: 5'- gCGGAGGGGGggccgaauguUCGUcuucagccCCGAGA-AGGGCAa -3' miRNA: 3'- -GCCUCUCCU----------AGCA--------GGCUCUgUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 148794 | 0.66 | 0.973284 |
Target: 5'- ---cGAGGAgUGUUCGGGuCGGGACAu -3' miRNA: 3'- gccuCUCCUaGCAGGCUCuGUCCUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 164777 | 0.66 | 0.967711 |
Target: 5'- aCGGAGGacGGGUUGgagauugUCGAGACGGG-CGc -3' miRNA: 3'- -GCCUCU--CCUAGCa------GGCUCUGUCCuGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 176324 | 0.66 | 0.970592 |
Target: 5'- gGGGGAGGAgggCGgUCG-GGCGGcGACAc -3' miRNA: 3'- gCCUCUCCUa--GCaGGCuCUGUC-CUGU- -5' |
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16002 | 3' | -55.7 | NC_004065.1 | + | 176463 | 0.7 | 0.865507 |
Target: 5'- uCGGGGAGGGaUGUCgggcaGAGGCGGaGGCAc -3' miRNA: 3'- -GCCUCUCCUaGCAGg----CUCUGUC-CUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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