miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 110403 0.66 0.810198
Target:  5'- -aCGCCacgGCCgaCGGCGUCuCCUCCgCCg -3'
miRNA:   3'- agGCGGagaCGG--GCUGUAG-GGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 139236 0.66 0.810198
Target:  5'- gUCaCGUC-CUGCCgGgacagcGCGUCgCCUCCCUg -3'
miRNA:   3'- -AG-GCGGaGACGGgC------UGUAG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 105043 0.66 0.810198
Target:  5'- -aCGCgUCUGUCCGGgGUCCUcagUUCCa -3'
miRNA:   3'- agGCGgAGACGGGCUgUAGGG---AGGGg -5'
16002 5' -61.5 NC_004065.1 + 96418 0.66 0.810198
Target:  5'- gUCCGCCUCgaaaucgcGCUCG-CAaCgCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-------CGGGCuGUaGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 80101 0.66 0.810197
Target:  5'- cCCGCCUcCUGCcgagCCGcGCGcCCCUCaUCCa -3'
miRNA:   3'- aGGCGGA-GACG----GGC-UGUaGGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 155196 0.66 0.810197
Target:  5'- gCCGCCUCgGuCCCGACccgggCgUCUCCa -3'
miRNA:   3'- aGGCGGAGaC-GGGCUGuag--GgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 229298 0.66 0.810197
Target:  5'- aCCGCUgagagacGCUCGACAUUCUUuacCCCCg -3'
miRNA:   3'- aGGCGGaga----CGGGCUGUAGGGA---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 64656 0.66 0.809378
Target:  5'- gUCCGCCgugcuggccgagaUCUGCaccaCCGACAUCCaccagaUCCa- -3'
miRNA:   3'- -AGGCGG-------------AGACG----GGCUGUAGGg-----AGGgg -5'
16002 5' -61.5 NC_004065.1 + 190593 0.66 0.801945
Target:  5'- aUCUGaguaUCUGUaucaUGGCGUCCCggCCCCg -3'
miRNA:   3'- -AGGCgg--AGACGg---GCUGUAGGGa-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 143467 0.66 0.801945
Target:  5'- cUCUGCgUCgucgugacGCCCGuGCGUCUggaUCCCCa -3'
miRNA:   3'- -AGGCGgAGa-------CGGGC-UGUAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 126790 0.66 0.801945
Target:  5'- aCCGUCgUCUGUCgCGAgGuggggaUCCCggCCCCg -3'
miRNA:   3'- aGGCGG-AGACGG-GCUgU------AGGGa-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 179146 0.66 0.801944
Target:  5'- aCCGuCCUC-GCCCGugccCGUCgaUCUCUCCg -3'
miRNA:   3'- aGGC-GGAGaCGGGCu---GUAG--GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 94470 0.66 0.801944
Target:  5'- gCCGCCUC--CCCGuCGUCCg-CCCg -3'
miRNA:   3'- aGGCGGAGacGGGCuGUAGGgaGGGg -5'
16002 5' -61.5 NC_004065.1 + 182274 0.66 0.801944
Target:  5'- aCC-CCUcCUGCCCGGCcauggCCuCUgaCCCCg -3'
miRNA:   3'- aGGcGGA-GACGGGCUGua---GG-GA--GGGG- -5'
16002 5' -61.5 NC_004065.1 + 200898 0.66 0.801944
Target:  5'- cCCGUCgcgCUGggcgaCCGGCcUCCCaagugUCCCCa -3'
miRNA:   3'- aGGCGGa--GACg----GGCUGuAGGG-----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 149928 0.66 0.801944
Target:  5'- -gUGCCcgUGCCCGAacucaCCCUCUCCu -3'
miRNA:   3'- agGCGGagACGGGCUgua--GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 177234 0.66 0.793558
Target:  5'- -gCGCgCUCUGCUCGcCucugCUUUCCCCu -3'
miRNA:   3'- agGCG-GAGACGGGCuGua--GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 153285 0.66 0.793558
Target:  5'- gCCGCCg--GCgCCG-CG-CCCgUCCCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCuGUaGGG-AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171462 0.66 0.793558
Target:  5'- aUCCGCUggaUC-GCgCCGaACAUCCg-CCCCa -3'
miRNA:   3'- -AGGCGG---AGaCG-GGC-UGUAGGgaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 146903 0.66 0.793558
Target:  5'- -aCGCCUC-GCCC-ACAg--CUCCCCg -3'
miRNA:   3'- agGCGGAGaCGGGcUGUaggGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.