Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16002 | 5' | -61.5 | NC_004065.1 | + | 55153 | 0.66 | 0.785045 |
Target: 5'- aCCGCCguu-CCCGGCccUCuUCUCCCCg -3' miRNA: 3'- aGGCGGagacGGGCUGu-AG-GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 43321 | 0.66 | 0.758817 |
Target: 5'- gUCGUCaUCUgGCCCGGCGgggacgCCCcacgcgccgcgUCCCCg -3' miRNA: 3'- aGGCGG-AGA-CGGGCUGUa-----GGG-----------AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 198368 | 0.66 | 0.758817 |
Target: 5'- cUUCGCCaggaaCaGCgCCGACGUCCCguagCCCg -3' miRNA: 3'- -AGGCGGa----GaCG-GGCUGUAGGGa---GGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 90181 | 0.66 | 0.767667 |
Target: 5'- cUCCGCCgUC-GCCCG-CcUCCCgggaCUCCa -3' miRNA: 3'- -AGGCGG-AGaCGGGCuGuAGGGa---GGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 86747 | 0.66 | 0.776412 |
Target: 5'- gCCGCCUCgGCCCuugaagcuGCcgCCC-CCgCCg -3' miRNA: 3'- aGGCGGAGaCGGGc-------UGuaGGGaGG-GG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 100445 | 0.66 | 0.776412 |
Target: 5'- gCCGCUUCU--CCGGCAUCUC-CaCCCg -3' miRNA: 3'- aGGCGGAGAcgGGCUGUAGGGaG-GGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 149247 | 0.66 | 0.776412 |
Target: 5'- gCCGCCgUC-GCCUG-C-UCCCUCUCUa -3' miRNA: 3'- aGGCGG-AGaCGGGCuGuAGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 191612 | 0.66 | 0.776412 |
Target: 5'- -aCGCCUCU-CCCGcgaaGUCCgugUCCCCg -3' miRNA: 3'- agGCGGAGAcGGGCug--UAGGg--AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93550 | 0.66 | 0.784187 |
Target: 5'- aCCgGCCUCggcucCCCGGCuuUCCggcucggCUCCCCa -3' miRNA: 3'- aGG-CGGAGac---GGGCUGu-AGG-------GAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 229298 | 0.66 | 0.810197 |
Target: 5'- aCCGCUgagagacGCUCGACAUUCUUuacCCCCg -3' miRNA: 3'- aGGCGGaga----CGGGCUGUAGGGA---GGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 110403 | 0.66 | 0.810198 |
Target: 5'- -aCGCCacgGCCgaCGGCGUCuCCUCCgCCg -3' miRNA: 3'- agGCGGagaCGG--GCUGUAG-GGAGG-GG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 64656 | 0.66 | 0.809378 |
Target: 5'- gUCCGCCgugcuggccgagaUCUGCaccaCCGACAUCCaccagaUCCa- -3' miRNA: 3'- -AGGCGG-------------AGACG----GGCUGUAGGg-----AGGgg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 146903 | 0.66 | 0.793558 |
Target: 5'- -aCGCCUC-GCCC-ACAg--CUCCCCg -3' miRNA: 3'- agGCGGAGaCGGGcUGUaggGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 18616 | 0.66 | 0.793558 |
Target: 5'- aCCGCCcagGCCC-ACGUUUC-CCCCg -3' miRNA: 3'- aGGCGGagaCGGGcUGUAGGGaGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 126790 | 0.66 | 0.801945 |
Target: 5'- aCCGUCgUCUGUCgCGAgGuggggaUCCCggCCCCg -3' miRNA: 3'- aGGCGG-AGACGG-GCUgU------AGGGa-GGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 190593 | 0.66 | 0.801945 |
Target: 5'- aUCUGaguaUCUGUaucaUGGCGUCCCggCCCCg -3' miRNA: 3'- -AGGCgg--AGACGg---GCUGUAGGGa-GGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 68203 | 0.66 | 0.758817 |
Target: 5'- gUCCGCC-C-GCCCGucCGUCCgUCCa- -3' miRNA: 3'- -AGGCGGaGaCGGGCu-GUAGGgAGGgg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 96418 | 0.66 | 0.810198 |
Target: 5'- gUCCGCCUCgaaaucgcGCUCG-CAaCgCUCCUCg -3' miRNA: 3'- -AGGCGGAGa-------CGGGCuGUaGgGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 139236 | 0.66 | 0.810198 |
Target: 5'- gUCaCGUC-CUGCCgGgacagcGCGUCgCCUCCCUg -3' miRNA: 3'- -AG-GCGGaGACGGgC------UGUAG-GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 105043 | 0.66 | 0.810198 |
Target: 5'- -aCGCgUCUGUCCGGgGUCCUcagUUCCa -3' miRNA: 3'- agGCGgAGACGGGCUgUAGGG---AGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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