Results 81 - 100 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16002 | 5' | -61.5 | NC_004065.1 | + | 161724 | 0.69 | 0.599463 |
Target: 5'- aCCGUCUCgaaGUCCGuCGccgagCCCUCCUCg -3' miRNA: 3'- aGGCGGAGa--CGGGCuGUa----GGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93785 | 0.69 | 0.637601 |
Target: 5'- cCCGCUcccgguucCUGUCCGGC--UCCUCCCCc -3' miRNA: 3'- aGGCGGa-------GACGGGCUGuaGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 154370 | 0.69 | 0.589965 |
Target: 5'- gCCGCCUCg--CCGACcUCcacuuccaccuCCUCCCCg -3' miRNA: 3'- aGGCGGAGacgGGCUGuAG-----------GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 210334 | 0.69 | 0.595661 |
Target: 5'- cUCCGCgUUUcagccguuacccgGCCCGGCAUacgccaccuuccaaCCCUUCCCu -3' miRNA: 3'- -AGGCGgAGA-------------CGGGCUGUA--------------GGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 202641 | 0.69 | 0.599463 |
Target: 5'- gCCGCCgcugCUGCugcugcugcugCCGGCucUUCUUCCCCg -3' miRNA: 3'- aGGCGGa---GACG-----------GGCUGu-AGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 165105 | 0.69 | 0.618514 |
Target: 5'- gUCGUCUCUGaggCGGCGUCCCgCCCg -3' miRNA: 3'- aGGCGGAGACgg-GCUGUAGGGaGGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 79675 | 0.69 | 0.618514 |
Target: 5'- -gUGCCgaacgUGCCCGACAUCCgcaUCCaCCg -3' miRNA: 3'- agGCGGag---ACGGGCUGUAGGg--AGG-GG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 59653 | 0.69 | 0.612792 |
Target: 5'- cUCCGCuacCUCUGCCuuucaugcccacgguCGACAUCCCga-CCa -3' miRNA: 3'- -AGGCG---GAGACGG---------------GCUGUAGGGaggGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 224819 | 0.7 | 0.552298 |
Target: 5'- aCCGCCgUCUGUCCGuag-CCCuugaucacgauuUCCCCg -3' miRNA: 3'- aGGCGG-AGACGGGCuguaGGG------------AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93412 | 0.7 | 0.570115 |
Target: 5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3' miRNA: 3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 38815 | 0.7 | 0.561656 |
Target: 5'- aUCCGCCUCU-CgCUGAUcUCCCcgacCCCCa -3' miRNA: 3'- -AGGCGGAGAcG-GGCUGuAGGGa---GGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 66403 | 0.7 | 0.557907 |
Target: 5'- gCCGCCgcucgauccggagCUaCCCGAgGUCCgCUCCCUa -3' miRNA: 3'- aGGCGGa------------GAcGGGCUgUAGG-GAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 112824 | 0.7 | 0.542987 |
Target: 5'- cCCGCCaucacCUGCCUGGCGcaacgCCUgCCCCa -3' miRNA: 3'- aGGCGGa----GACGGGCUGUa----GGGaGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 27058 | 0.7 | 0.58428 |
Target: 5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3' miRNA: 3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 200586 | 0.71 | 0.48837 |
Target: 5'- cUCCGCCacCUaCCCGGCAccgucuucUCCCUgCCCu -3' miRNA: 3'- -AGGCGGa-GAcGGGCUGU--------AGGGAgGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 30823 | 0.71 | 0.515386 |
Target: 5'- aUCGCCUC-GCCaucACAUaaacCCCUCCCCu -3' miRNA: 3'- aGGCGGAGaCGGgc-UGUA----GGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 133274 | 0.71 | 0.479513 |
Target: 5'- cUCCGCCgUC-GCCCuGCucgCCCUCgCCCg -3' miRNA: 3'- -AGGCGG-AGaCGGGcUGua-GGGAG-GGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 152631 | 0.71 | 0.488371 |
Target: 5'- aUCC-CCU-UGCCCGACAUCCCgacgCUCg -3' miRNA: 3'- -AGGcGGAgACGGGCUGUAGGGa---GGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 136683 | 0.71 | 0.488371 |
Target: 5'- aCCGCCUgCUGCgaUCGGC-UCgCCUUCCCg -3' miRNA: 3'- aGGCGGA-GACG--GGCUGuAG-GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 27432 | 0.71 | 0.488371 |
Target: 5'- cCCaGCCUCUGCCCGucccACcgUCgUCUCCg -3' miRNA: 3'- aGG-CGGAGACGGGC----UGuaGGgAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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