miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 53559 1.12 0.001075
Target:  5'- cUCCGCCUCUGCCCGACAUCCCUCCCCg -3'
miRNA:   3'- -AGGCGGAGACGGGCUGUAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93822 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93854 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93886 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 102551 0.78 0.206496
Target:  5'- cCCGCCgc-GCCCGACca-CCUCCCCg -3'
miRNA:   3'- aGGCGGagaCGGGCUGuagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 116126 0.77 0.235749
Target:  5'- cUCCGcCCUCUcGUCCGGCGUaagagccgcgaaCCUCCCCa -3'
miRNA:   3'- -AGGC-GGAGA-CGGGCUGUAg-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 53695 0.75 0.30856
Target:  5'- aUCGUgUCgccGCCCGACcgCCCUCCUCc -3'
miRNA:   3'- aGGCGgAGa--CGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 90492 0.74 0.35755
Target:  5'- cUCGCgUCUuggcGUCCGACGUCCUgaUCCCCu -3'
miRNA:   3'- aGGCGgAGA----CGGGCUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 91766 0.73 0.380153
Target:  5'- gUCCGCCUCggacaCCCGA---CCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGac---GGGCUguaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 186750 0.73 0.387898
Target:  5'- gUCGCCac-GCCgGACAUCCC-CCCCu -3'
miRNA:   3'- aGGCGGagaCGGgCUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 2154 0.72 0.428134
Target:  5'- gUCCGCCgUCUccccccGUCCGugAUCUC-CCCCa -3'
miRNA:   3'- -AGGCGG-AGA------CGGGCugUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 160869 0.72 0.436473
Target:  5'- cUCCGCCUCguccaGCgUCGACAg-CUUCCCCa -3'
miRNA:   3'- -AGGCGGAGa----CG-GGCUGUagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 206461 0.72 0.452572
Target:  5'- cCCGCCUgcCUGCCCGcccgcccGCAUCUucuuCUCCCg -3'
miRNA:   3'- aGGCGGA--GACGGGC-------UGUAGG----GAGGGg -5'
16002 5' -61.5 NC_004065.1 + 158475 0.72 0.453428
Target:  5'- -gCGCCUCUcCCCGAacaCGUCCgUCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCU---GUAGGgAGGGg -5'
16002 5' -61.5 NC_004065.1 + 133274 0.71 0.479513
Target:  5'- cUCCGCCgUC-GCCCuGCucgCCCUCgCCCg -3'
miRNA:   3'- -AGGCGG-AGaCGGGcUGua-GGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 57935 0.71 0.479513
Target:  5'- gCCGCCUCc-CCCGGC--CCCUCCaCCc -3'
miRNA:   3'- aGGCGGAGacGGGCUGuaGGGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 148151 0.71 0.48837
Target:  5'- cCCGCCg-UGCCCGAgaacCAUCUCUUCaCCa -3'
miRNA:   3'- aGGCGGagACGGGCU----GUAGGGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 200586 0.71 0.48837
Target:  5'- cUCCGCCacCUaCCCGGCAccgucuucUCCCUgCCCu -3'
miRNA:   3'- -AGGCGGa-GAcGGGCUGU--------AGGGAgGGG- -5'
16002 5' -61.5 NC_004065.1 + 27432 0.71 0.488371
Target:  5'- cCCaGCCUCUGCCCGucccACcgUCgUCUCCg -3'
miRNA:   3'- aGG-CGGAGACGGGC----UGuaGGgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 152631 0.71 0.488371
Target:  5'- aUCC-CCU-UGCCCGACAUCCCgacgCUCg -3'
miRNA:   3'- -AGGcGGAgACGGGCUGUAGGGa---GGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.