miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 27432 0.71 0.488371
Target:  5'- cCCaGCCUCUGCCCGucccACcgUCgUCUCCg -3'
miRNA:   3'- aGG-CGGAGACGGGC----UGuaGGgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 30823 0.71 0.515386
Target:  5'- aUCGCCUC-GCCaucACAUaaacCCCUCCCCu -3'
miRNA:   3'- aGGCGGAGaCGGgc-UGUA----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 63888 0.71 0.524527
Target:  5'- gCCGCCg--GCgCCGACGUCUCUgCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCUGUAGGGAgGGg -5'
16002 5' -61.5 NC_004065.1 + 167284 0.71 0.524527
Target:  5'- aUCGCCUCuUGCUgGA-GUCCCUCCUa -3'
miRNA:   3'- aGGCGGAG-ACGGgCUgUAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 112824 0.7 0.542987
Target:  5'- cCCGCCaucacCUGCCUGGCGcaacgCCUgCCCCa -3'
miRNA:   3'- aGGCGGa----GACGGGCUGUa----GGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 224819 0.7 0.552298
Target:  5'- aCCGCCgUCUGUCCGuag-CCCuugaucacgauuUCCCCg -3'
miRNA:   3'- aGGCGG-AGACGGGCuguaGGG------------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 66403 0.7 0.557907
Target:  5'- gCCGCCgcucgauccggagCUaCCCGAgGUCCgCUCCCUa -3'
miRNA:   3'- aGGCGGa------------GAcGGGCUgUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 38815 0.7 0.561656
Target:  5'- aUCCGCCUCU-CgCUGAUcUCCCcgacCCCCa -3'
miRNA:   3'- -AGGCGGAGAcG-GGCUGuAGGGa---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 93412 0.7 0.570115
Target:  5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3'
miRNA:   3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 27058 0.7 0.58428
Target:  5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3'
miRNA:   3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 154370 0.69 0.589965
Target:  5'- gCCGCCUCg--CCGACcUCcacuuccaccuCCUCCCCg -3'
miRNA:   3'- aGGCGGAGacgGGCUGuAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 142733 0.69 0.589966
Target:  5'- -gCGCCUC-GCUCGACuucuguagcgGUCUCUCCCg -3'
miRNA:   3'- agGCGGAGaCGGGCUG----------UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 210334 0.69 0.595661
Target:  5'- cUCCGCgUUUcagccguuacccgGCCCGGCAUacgccaccuuccaaCCCUUCCCu -3'
miRNA:   3'- -AGGCGgAGA-------------CGGGCUGUA--------------GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 28516 0.69 0.599463
Target:  5'- uUCCGCCcgCUGCCUGACGagaguagcgCCCgCCgCa -3'
miRNA:   3'- -AGGCGGa-GACGGGCUGUa--------GGGaGGgG- -5'
16002 5' -61.5 NC_004065.1 + 202641 0.69 0.599463
Target:  5'- gCCGCCgcugCUGCugcugcugcugCCGGCucUUCUUCCCCg -3'
miRNA:   3'- aGGCGGa---GACG-----------GGCUGu-AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 161724 0.69 0.599463
Target:  5'- aCCGUCUCgaaGUCCGuCGccgagCCCUCCUCg -3'
miRNA:   3'- aGGCGGAGa--CGGGCuGUa----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 160237 0.69 0.608981
Target:  5'- cUCCGCCUC-GCUCuGCAUCCUcuUCUUCa -3'
miRNA:   3'- -AGGCGGAGaCGGGcUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 59653 0.69 0.612792
Target:  5'- cUCCGCuacCUCUGCCuuucaugcccacgguCGACAUCCCga-CCa -3'
miRNA:   3'- -AGGCG---GAGACGG---------------GCUGUAGGGaggGG- -5'
16002 5' -61.5 NC_004065.1 + 165105 0.69 0.618514
Target:  5'- gUCGUCUCUGaggCGGCGUCCCgCCCg -3'
miRNA:   3'- aGGCGGAGACgg-GCUGUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 79675 0.69 0.618514
Target:  5'- -gUGCCgaacgUGCCCGACAUCCgcaUCCaCCg -3'
miRNA:   3'- agGCGGag---ACGGGCUGUAGGg--AGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.